v5.1.9

✨ Enhancements

• Format group comparison lollipop plot y-axis label @gblaih (#4419)
• Do not show style attributes in timeline data table on patient page @alisman (#4427)
• Add user selected gene to the URL in group comparison lollipop plot @gblaih (#4426)

👷‍♀️ Testing, Configuration & Deployment

• Plots tab option validation did not allow for the "none" selected value @alisman (#4420)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.8...v5.1.9
• Frontend: v5.1.8...v5.1.9

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.8

✨ Enhancements

• Advert for AACR Genie portal at top of study list @alisman (#4416)

🐛 Bug Fixes

• Only allow expression profiles from tcga pancan in plots tab @alisman (#4409)

📐 Prototype (Internal Use)

• Left truncation adjustment for KM plot @dippindots (#4324) Test links: Study page Comparison page
• Lollipop plot (Mutation count/frequency) for group comparison page @gblaih (#4392) Test link

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.7...v5.1.8
• Frontend: v5.1.7...v5.1.8

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.7

✨ Enhancements

• Add spinner to iFrame of Resource Tabs @pvannierop (#4402)

🐛 Bug Fixes

• Sample profile alerts should only consider active samples @alisman (#4406)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.6...v5.1.7
• Frontend: v5.1.6...v5.1.7

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.6

🧬 Features

• Add feature flag store @alisman (#4398)

✨ Enhancements

• Add alerts to patient view pathway and gen. evo. tabs when samples are unprofiled @alisman (#4401)

🐛 Bug Fixes

• Fix bug where patient pathway lacks a CNA profile @alisman (#4403)
• Fix hidden columns when switching transcripts @leexgh (#4395)

⚙️ Changes to handle external APIs

• Update OncoKB Client @zhx828 (#4405)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.5...v5.1.6
• Frontend: v5.1.5...v5.1.6

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.5

✨ Enhancements

• Add alerts on patient view alteration tables when one sample of many is not profiled @alisman (#4391)
• Remove samples of overlapping patients in patient-level analysis @leexgh (#4390)

🐛 Bug Fixes

• Fix issue with annotation on patient view when using cohort navigation (refactor page to reinstatiate) @alisman (#4393)
• Fix infinite loop when study search query consists of single "or" @BasLee (#4394)
• Add testing library as prod dep @alisman (#4389)

👷‍♀️ Testing, Configuration & Deployment

• Use genomenexus.isoform_override_source serverprop @inodb (#4400)
• Remove rc from circeci jobs @alisman (#4397)

👷‍♀️ Testing, Configuration & Deployment

• Add e2e test for patient view cohort navigation and annotation results @alisman (#4396)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.4...v5.1.5
• Frontend: v5.1.4...v5.1.5

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.4

✨ Enhancements

• Comparison page: show p value tooltip based on group size @dippindots (#4383)

🐛 Bug Fixes

• Patient View: Alert should indicate when samples are not profiled vs data unavailable @gblaih (#4374)
• Patient View: Timeline should allow custom event renderers to defer to default color getter @alisman (#4384)
• P/q values overlapping in comparison view @gblaih (#4382)

🧰 Maintenance

• Update Genome Nexus API Client @alisman (#4381)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.3...v5.1.4
• Frontend: v5.1.3...v5.1.4

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.3

✨ Enhancements

• Enable Mutation Assessor and remove unavailable fields @leexgh (#4376)
• Tweak behavior of study search feature on homepage @alisman (#4375)

👷‍♀️ Testing, Configuration & Deployment

• Fix query page localdb test @alisman (#4380)
• Update screenshots after transcript change @alisman (#4379)
• Fix localdb test @dippindots (#4378)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.2...v5.1.3
• Frontend: v5.1.2...v5.1.3

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.2

🧬 Features

• Filter studies by reference genome @BasLee (#4305)

🐛 Bug Fixes

• Study View: Reset Charts button turns oncogene filter on @gblaih (#4371)

🎨 Style Tweaks

• Refine use of MSKTabs inside of menus @alisman (#4365)

👷‍♀️ Testing, Configuration & Deployment

• Update sleep command for local e2e test @dippindots (#4373)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.1...v5.1.2
• Frontend: v5.1.1...v5.1.2

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.1

✨ Enhancements

• Study View: Gene chart oncogene filter needs tooltip @gblaih (#4370)
• Oncoprint tracks menu: move groups and charts to top level @gblaih (#4368)

👷‍♀️ Testing, Configuration & Deployment

• Fix group comparision heatmap e2e test @BasLee (#4369)
• Update oncoprinter_example_data,_annotated_by_oncokb @zhx828 (#4366)

📦 Package Improvements

• Expose method in OncoKbUtils @zhx828 (#4367)
• Utilize levelExcludedCancerTypes from OncoKB when showing cancer type name @zhx828 (#4364)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.0...v5.1.1
• Frontend: v5.1.0...v5.1.1

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.0

✨ Enhancements

• Resource table should display a column for resource description field @gblaih (#4363)
• Oncoprint track saving feature @BasLee (#4230)
• Calculate heatmap values per group @BasLee (#4361)
• Use MSKCC isoforms by default @inodb (#4350)
• Patient View CNA table should display selection state on row click @gblaih (#4360)

🐛 Bug Fixes

• When we detect an invalid profile id in study view filter, show a site error @alisman (#4314)
• Oncoprint tooltip should properly display "fusion partner message" @alisman (#4362)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.0.2...v5.1.0
• Frontend: v5.0.2...v5.1.0

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning