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Oncoprint tooltip should properly display "fusion partner message" #4362

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merged 1 commit into from
Aug 30, 2022

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@alisman alisman commented Aug 29, 2022

We were showing a tooltip suggesting that all unprofiled samples were profiled via their fusion partner, even when there was no sv data. This makes sure that we check for presence of the sv alteration.

Fixes cBioPortal/cbioportal#9694

Testing link:
https://www.cbioportal.org/results/oncoprint?cancer_study_list=msk_impact_2017&tab_index=tab_visualize&case_set_id=msk_impact_2017_all&Action=Submit&gene_list=FGF19%250APBRM1%250ACCDC6&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=structural_variants&geneset_list=%20

A sample WITH a profiled fusion parter:
image

No fusion event detected:
image

@alisman alisman changed the title Oncoprint tooltip should properly "fusion partner message" Oncoprint tooltip should properly display "fusion partner message" Aug 29, 2022
@alisman alisman requested a review from inodb August 30, 2022 14:10
@alisman alisman added the bug label Aug 30, 2022
@alisman alisman merged commit c3a0130 into cBioPortal:master Aug 30, 2022
@alisman alisman deleted the fusionProf branch August 30, 2022 22:06
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Mysterious "fusion-partner status" displayed in oncoprint tooltip
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