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Improving spDCM tutorial#500

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hstrey merged 63 commits intomasterNeuroblox/Neuroblox.jl:masterfrom spDCM_tutorial_revisionsNeuroblox/Neuroblox.jl:spDCM_tutorial_revisionsCopy head branch name to clipboardJan 3, 2025

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Commits on Nov 13, 2024

• updated CMC code (#474)

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• removed some wrong lines that resulted from a rebase

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• Changing edges to standard nomenclature.

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• change of time scale from seconds to milliseconds

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• bump GraphDynamics compat (#491)

  

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• Add decision making example (#492)

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• Update README.md

  

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• Update README.md

  

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• remove jcn=0 pattern from discrete blox

  

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• Fix CI errors from jcn variables being set with initial conditions (#494)

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• Update README.md

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• added plots to GUI's plotdetail

  

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• added more regions

  

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• add plotdetail properly

  

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• Bump MTK compat (#497)

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• Firing rate cleaning (#496)

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• address Scott’s feedback on the basal ganglia tutorial (#498)

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• Plot recipes improvements (#495)

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• Change BloxConnector to Connector (#502)

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• Improve show for Connector objects (#503)

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• Switch Connector fields from Vector{Vector{...}} to Vector{...} (#504)

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• Generic Connector dispatch (#505)

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• Replace output field with MTK.outputs function and cleanup (#507)

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• filter out empty spike affects (#508)

  

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• Add PoissonSpikeTrain to Connector.spike_affects collection and improve its UI (#509)

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• add simple stimulus example (#511)

  

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• More UI fixes & improvements for IAP course (#513)

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• added Plotsettings tab in GUI.jl

  

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• moved plot options to Sim

  

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• Switch QIF neurons to use discrete events (#514)

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• print to the passed IO explicitly (#515)

  

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• added adj to special plot options

  

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• Making code consistent with SPM25 (#501)

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• updated CMC code (#474)

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• removed some wrong lines that resulted from a rebase

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• fixed effective connectivity recipe

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• added some more explanator text

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• fixed readme

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• Update README.md

  

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• remove jcn=0 pattern from discrete blox

  

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• Fix CI errors from jcn variables being set with initial conditions (#494)

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• added plots to GUI's plotdetail

  

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• added more regions

  

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• Bump MTK compat (#497)

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• Change BloxConnector to Connector (#502)

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• Improve show for Connector objects (#503)

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• Switch Connector fields from Vector{Vector{...}} to Vector{...} (#504)

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• Generic Connector dispatch (#505)

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Commits on Jan 3, 2025

• Replace output field with MTK.outputs function and cleanup (#507)

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• filter out empty spike affects (#508)

  

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• Add PoissonSpikeTrain to Connector.spike_affects collection and improve its UI (#509)

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• More UI fixes & improvements for IAP course (#513)

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• added Plotsettings tab in GUI.jl

  

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• moved plot options to Sim

  

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• Switch QIF neurons to use discrete events (#514)

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• print to the passed IO explicitly (#515)

  

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• added adj to special plot options

  

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• Making code consistent with SPM25 (#501)

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• start learning tutorial (#480)

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• added an option for Neuron selection

  

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• updated to 0.5.2

  

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• Added more comments to the tutorial documentation

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• Merge branch 'master' into spDCM_tutorial_revisions

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