Making code consistent with SPM25 #501
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* switched from symbolic arrays to list of symbolic parameters. Needed to be able to set tunable flag for individual parameters of the array. Added untune! utility function to set tunable flag to false on list elements. * added new approach to set tunable flag for the connection matrix also to the tutorial * use generate_weight_param also in StimulusBlox and ObserverBlox connectors and set standard connection weight to non-tunable * fixed and cleaned code * minor changes * update MTK compat * added Project.toml to test * fixed MTK compat once more * added more packages to test environment needed in GraphDynamics tests * remove test deps and unnecessary deps * add Test to tect project * remove Test dep from main Project * add missing test deps * add Statistics dep * removed [extras] from Project.toml * added [extras] again. --------- Co-authored-by: haris organtzidis <organtzh@gmail.com>
…enoid mixing during the "expectation" update step
* switched from symbolic arrays to list of symbolic parameters. Needed to be able to set tunable flag for individual parameters of the array. Added untune! utility function to set tunable flag to false on list elements. * added new approach to set tunable flag for the connection matrix also to the tutorial * use generate_weight_param also in StimulusBlox and ObserverBlox connectors and set standard connection weight to non-tunable * fixed and cleaned code * minor changes * update MTK compat * added Project.toml to test * fixed MTK compat once more * added more packages to test environment needed in GraphDynamics tests * remove test deps and unnecessary deps * add Test to tect project * remove Test dep from main Project * add missing test deps * add Statistics dep * removed [extras] from Project.toml * added [extras] again. --------- Co-authored-by: haris organtzidis <organtzh@gmail.com>
…tor norms as default, thus use opnorm in Julia.
david-hofmann
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Jan 2, 2025
* updated CMC code (#474) * switched from symbolic arrays to list of symbolic parameters. Needed to be able to set tunable flag for individual parameters of the array. Added untune! utility function to set tunable flag to false on list elements. * added new approach to set tunable flag for the connection matrix also to the tutorial * use generate_weight_param also in StimulusBlox and ObserverBlox connectors and set standard connection weight to non-tunable * fixed and cleaned code * minor changes * update MTK compat * added Project.toml to test * fixed MTK compat once more * added more packages to test environment needed in GraphDynamics tests * remove test deps and unnecessary deps * add Test to tect project * remove Test dep from main Project * add missing test deps * add Statistics dep * removed [extras] from Project.toml * added [extras] again. * fixed norm difference between MATLAB and Julia, MATLAB provides operator norms as default, thus use opnorm in Julia. * fixed untune in tutorial
david-hofmann
added a commit
that referenced
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Jan 3, 2025
* updated CMC code (#474) * switched from symbolic arrays to list of symbolic parameters. Needed to be able to set tunable flag for individual parameters of the array. Added untune! utility function to set tunable flag to false on list elements. * added new approach to set tunable flag for the connection matrix also to the tutorial * use generate_weight_param also in StimulusBlox and ObserverBlox connectors and set standard connection weight to non-tunable * fixed and cleaned code * minor changes * update MTK compat * added Project.toml to test * fixed MTK compat once more * added more packages to test environment needed in GraphDynamics tests * remove test deps and unnecessary deps * add Test to tect project * remove Test dep from main Project * add missing test deps * add Statistics dep * removed [extras] from Project.toml * added [extras] again. * fixed norm difference between MATLAB and Julia, MATLAB provides operator norms as default, thus use opnorm in Julia. * fixed untune in tutorial
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WIP: making our spDCM consistent with SPM25.