An R Package for Geneset Enrichment Workflows

A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries

GOAT: efficient and robust identification of gene set enrichment

GSEA plots in ggplot2

Dual Threshold Optimization compares two ranked lists of features (e.g. genes) to determine the rank threshold for each list that minimizes the hypergeometric p-value of the overlap of features. It then calculates a permutation based empirical p-value and an FDR

Deconvolution of bulk RNA-seq data using single-cell RNA-seq data as reference

An R package containing multiple data sets for bioinformatics analysis

Analysis pipeline to examine how gene pleiotropy influences local adaptation in Silverleaf Sunflowers

bbcRNA: An R package for facilitating RNA-Seq analysis

Module for GSEA Julia Implementation