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@vari-bbc

VAI BBC

Van Andel Institute Bioinformatics and Biostatistics Core

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  1. rnaseq_workflow rnaseq_workflow Public

    snakemake workflow for bulk RNA-seq workflow using STAR-edgeR

    Python 8 17

  2. Biscuit_Snakemake_Workflow Biscuit_Snakemake_Workflow Public archive

    Snakemake Workflow For WGBS Data

    Python 3 12

  3. scRNAseq scRNAseq Public

    Python 2

  4. piwi_RNA_pipeline piwi_RNA_pipeline Public

    Scripts for heirarchical assignment of reads to feature biotypes

    Perl 1

  5. GROseq_scripts GROseq_scripts Public

    Shell 1

  6. Pioli_2022_ASCs_code Pioli_2022_ASCs_code Public

    R 1

Repositories

Showing 10 of 29 repositories
  • EVI2_Analysis Public

    Analysis code pertaining to the EVI-2 manuscript titled "Oral vitamin C supplementation in patients with low-risk myeloid malignances and clonal cytopenia of undetermined significance: Results from EVI-2, a randomized, placebo-controlled phase 2 study "

    vari-bbc/EVI2_Analysis’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Jan 7, 2025
  • rnaseq_workflow Public

    snakemake workflow for bulk RNA-seq workflow using STAR-edgeR

    vari-bbc/rnaseq_workflow’s past year of commit activity
    Python 8 GPL-3.0 17 3 2 Updated Dec 23, 2024
  • vari-bbc/methylation_array’s past year of commit activity
    R 0 0 2 0 Updated Dec 11, 2024
  • prep_bbc_shared Public

    Pipeline for preparing shared resources such as aligner index files in the BBC.

    vari-bbc/prep_bbc_shared’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Nov 18, 2024
  • demultiplex Public
    vari-bbc/demultiplex’s past year of commit activity
    Shell 0 GPL-3.0 1 5 0 Updated Nov 8, 2024
  • vari-bbc/Intro_to_Linux_for_HPC’s past year of commit activity
    TeX 0 3 0 0 Updated Oct 25, 2024
  • vari-bbc/Peaks_workflow’s past year of commit activity
    Python 0 GPL-3.0 0 2 0 Updated Oct 22, 2024
  • Ugcg-KO_proteomics_analysis Public

    Proteomics + Enrichment analysis code for comparing Ugcg-KO samples

    vari-bbc/Ugcg-KO_proteomics_analysis’s past year of commit activity
    0 0 0 0 Updated Oct 3, 2024
  • VAI-RWorkshop-2024 Public

    Accessing documents from VAI R workshop 2024

    vari-bbc/VAI-RWorkshop-2024’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 11, 2024
  • Fly_Analysis Public
    vari-bbc/Fly_Analysis’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Sep 6, 2024

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