Updates for assay, platform, template #179
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allaway
reviewed
Jul 14, 2022
| NextSeq 2000,Illumina NextSeq 2000,,,FALSE,,platform,,,,NextSeq 2000,Class,Assay,Platform,Platform,,, | ||
| HiSeq2000,Illumina HiSeq 2000,,,FALSE,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL11154,platform,,,,HiSeq2000,Class,Assay,Platform,Platform,,, | ||
| MiSeq,Illumina MiSeq,,,FALSE,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL15520,platform,,,,MiSeq,Class,Assay,Platform,Platform,,, | ||
| Illumina HiSeq 3000,Illumina HiSeq 3000,,,FALSE,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL21290,platform,,,,HiSeq3000,Class,Assay,Platform,Platform,,, |
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This is great! Do we need to remap values in the portal as well?
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Yep, can track that in the internal JIRA issue.
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Re M3 MPNST: I think the name "M3 MPNST" is fine since that is the value as provided by the ctb on GEO. A description could be "A patient-derived MPNST cell line." We can also create a nf tools database listing, time permitting. Maybe once they publish their paper. |
This was referenced Jul 22, 2022
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Issues somewhat related to NFOSI-186: