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More consistent platform values to match GEO if possible #176

Closed
Tracked by #179
anngvu opened this issue Jul 12, 2022 · 1 comment
Closed
Tracked by #179

More consistent platform values to match GEO if possible #176

anngvu opened this issue Jul 12, 2022 · 1 comment
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anngvu commented Jul 12, 2022 •
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Also fulfills this issue dug up from the internal annals -- NFINT-86:

For all values under the attribute/key , align spacing and ensure all values start with the instrumentation company name – e.g., Illumina Next Seq 550 (not Next Seq 550). Do this for both all files, and in the NF schema.

Mainly came up again as something that might help eliminate an additional mapping step for GEO vals.
anngvu added a commit that referenced this issue Jul 13, 2022
@anngvu
Update platforms as much as possible per issue #176
50b1dd4
@anngvu anngvu changed the title More consistent platform values More consistent platform values to match GEO if possible Jul 13, 2022
@anngvu anngvu mentioned this issue Jul 13, 2022
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anngvu added a commit that referenced this issue Jul 15, 2022
@anngvu @nfosi-service
Updates for assay, platform, template (#179)
1f72677 
* Revise 'extended' templates per issue #175

* Add CUT&RUN per issue #177

* Update platforms as much as possible per issue #176

* Build jsonld

* Add M3 MPNST cell line

* Build jsonld

Co-authored-by: nf-osi[bot] <nf-osi@sagebionetworks.org>
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allaway commented Jul 22, 2022

resolved in #179

@allaway allaway closed this as completed Jul 22, 2022
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