Starred repositories
Reproducible Analyses accompanying DADA2 + PacBio Manuscript
Bioinformatic processing for large Illumina metabarcoding studies
A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets
creating hybrid-gene phylogenetic trees for diversity analyses
Workflow to generate interactive feature selection report for cross-sectional or longitudinal studies
Repository for code shared be presenters in the EFI hosted Statistical Methods Seminar Series
python script to demultiplex illumina reads
A python package to query different databases of boldsystems.org
code used in "Contrasting Patterns of Microbial Dominance in the Arabidopsis thaliana Phyllosphere"
Vanilla regression methods for microbiome differential abundance analysis
Physalia workshop on Generalized Linear Latent Variable Models by Bert van der Veen
Wrapper function for 'inlabru' for modeling species distribution models from disparate datasets.
Recreating SEM analyses from papers using the R lavaan package
A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
Spatio-temporal analysis of univariate or multivariate data, e.g., standardizing data for multiple species or stages
❗ This is a read-only mirror of the CRAN R package repository. boral — Bayesian Ordination and Regression AnaLysis
Scalable joint species distribution modeling
