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Update to Genomicsdb 1.1.2.2 with Linux and MacOS shared libraries packaged #6206

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merged 3 commits into from
Oct 24, 2019

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nalinigans
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Update to 1.1.2.2 with Linux and MacOS shared libraries packaged and added junit to check if they are in the genomicsdb-.jar.
Also brought back #6188 and #6190 into this branch which had to be reverted before - see #6204.

nalinigans and others added 3 commits October 8, 2019 22:33
…ac OSX shared libraries are included in genomicsdb.jar
* Move vid combine protobuf mapping overrides from GenomicsDB ExportConfiguration to Import

* Comment out MOVE_TO_FORMAT as it is not used as yet

* Change AS_QUALapprox combine operation to element wise int sum
@nalinigans nalinigans requested a review from droazen October 9, 2019 14:11
@@ -33,6 +33,15 @@ public void testGenomicsDBInClassPath(){
Assert.assertNotNull(GenomicsDBLibLoader.class.getResource(path), "Could not find the genomicsdb binary at " + path);
}

@Test
public void testGenomicsDBJarForNativeLibraries() {
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Test for Linux and MacOS shared native libraries in genomicsdb jar.

@droazen droazen self-assigned this Oct 16, 2019
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👍 Looks good to me -- thanks @nalinigans

@droazen droazen merged commit 0cfa5dd into master Oct 24, 2019
@droazen droazen deleted the genomicsdb_1.1.2.2 branch October 24, 2019 16:47
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2 participants