Move to GenomicsDB 1.1.2

[nalinigans]

These are the changes relevant to gatk -

• Allow changes for allele specific and other annotations to vid file via GenomicsDBImporter without hardcoding them in genomicsdb. See GenomicsDB Fix 39. Thanks @mlathara.
• Fix for
  BUGreportGATK-07-19-19 reported by @bshifaw where a large ploidy + number of genotypes was leading to math overflow. The overflow is now caught and GenomicsDB stops enumerating genotypes for this case. Thanks @kgururaj.
• Fix for missing libcurl in the native GenomicsDB library - Issue GenomicsDBImport java.lang.ExceptionInInitializerError #6122
• Fix to avoid crashing when vcfbufferstream from htslib happens to be invalid. This check was put in response to the Forum Issue 59667. Note that the test vcfs sample2, sample3 and sample4 had to be changed to be htslib compliant for importing and to run org.broadinstitute.hellbender.tools.walkers.mutect.CreateSomaticPanelOfNormalsIntegrationTest successfully.
• Allow for native GenomicsDBExceptions to be propagated as java IOExceptions to allow gatk to gracefully handle the exception by printing out relevant information. See GenomicsDB Fix 68.
• Fix for issues using vid protobuf interface to pass vid information and there is more than one config. Thanks @mlathara.

[droazen]

👍