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chore(qa): Update CanineDC with Gen3 March Release #1230

Merged
merged 3 commits into from
Mar 18, 2020
Merged

chore(qa): Update CanineDC with Gen3 March Release #1230

merged 3 commits into from
Mar 18, 2020

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themarcelor
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@PlanXCyborg
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caninedc.org/manifest.json

Deployment changes

  • arborist
  • fence
  • guppy
  • indexd
  • peregrine
  • pidgin
  • portal
    • New optional title parameter in Terra Export Warning configuration: terraExportWarning: { subjectThreshold: int, title: string(optional), message: string(optional) } (uc-cdis/portal#656)
    • Added terraExportWarning: { subjectThreshold: <number>, message: <string, optional> } to portal config. (uc-cdis/portal#642)
    • New optional portal config flag: dataExplorerConfig.terraTemplate. The value of this parameter is placed in the Terra export URL as the value of the query parameter 'template'. (uc-cdis/portal#645)
    • InCommon login needs fence 4.8.0 (uc-cdis/portal#595)
    • Need Guppy 0.3.7+ to handle large file size (uc-cdis/portal#603)
    • if deployed with "useArboristUI": true, needs Arborist's GET /auth/mapping endpoint to be exposed via revproxy. (useArboristUI false by default) (uc-cdis/portal#592)
    • New optional portal config field called adminPreAppliedFilters. Goes in data/config/*.json. (uc-cdis/portal#576)
    • For a "cert" if the required document is a quiz, then hasCorrectAnswers should be true, otherwise false. (uc-cdis/portal#571)
    • Windmill lists unmapped files by checking Indexd. Before centralized auth's deployment, a file was determined to be unmapped by checking if the acl field was null. After centralized auth, we use the authz field instead. The new manifest configuration setting use_indexd_authz in the global block specifies which of the two fields should be used. This field defaults to false. (uc-cdis/portal#570)
    • Deployed in https://qa-canine.planx-pla.net with fence version < 3, index authz field set to false (uc-cdis/portal#570)
    • (by default). (uc-cdis/portal#570)
    • Deployed in https://qa-brain.planx-pla.net with fence version > 3, index authz field set to true. (uc-cdis/portal#570)
    • New portal configuration and images for AnVIL (uc-cdis/portal#569)
    • Requires a url to be specified in dataExplorerConfig called terraExportURL (uc-cdis/portal#568)
    • This should be bvdp-saturn-${env}.appspot.com/#import-data, where ${env} is dev, staging, or prod (uc-cdis/portal#568)
    • Needs a version of cloud-automation that exposes arborist's auth/proxy endpoint (uc-cdis/portal#565)
    • fixed DAT requires Guppy >= 0.3.1 (uc-cdis/portal#563)
    • DAT requires Guppy >= 0.3.0 (uc-cdis/portal#561)
    • This change requires sower version >= 0.3.0. (uc-cdis/portal#562)
    • This PR requires feat/support is not op for filter guppy#45 (0.2.1+) if want to use Guppy for NIAID (uc-cdis/portal#558)
    • require fileExplorerConfig block with buttons (uc-cdis/portal#554)
  • sheepdog
  • spark
    • (uc-cdis/spark#11)
    • (uc-cdis/spark#10)
  • wts
    • use the latest version of the python 3 base image (uc-cdis/wts#14)

@PlanXCyborg
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caninedc.org/manifest.json

Deployment changes

  • arborist
  • fence
  • guppy
  • indexd
  • peregrine
  • pidgin
  • portal
    • New optional title parameter in Terra Export Warning configuration: terraExportWarning: { subjectThreshold: int, title: string(optional), message: string(optional) } (uc-cdis/portal#656)
    • Added terraExportWarning: { subjectThreshold: <number>, message: <string, optional> } to portal config. (uc-cdis/portal#642)
    • New optional portal config flag: dataExplorerConfig.terraTemplate. The value of this parameter is placed in the Terra export URL as the value of the query parameter 'template'. (uc-cdis/portal#645)
    • InCommon login needs fence 4.8.0 (uc-cdis/portal#595)
    • Need Guppy 0.3.7+ to handle large file size (uc-cdis/portal#603)
    • if deployed with "useArboristUI": true, needs Arborist's GET /auth/mapping endpoint to be exposed via revproxy. (useArboristUI false by default) (uc-cdis/portal#592)
    • New optional portal config field called adminPreAppliedFilters. Goes in data/config/*.json. (uc-cdis/portal#576)
    • For a "cert" if the required document is a quiz, then hasCorrectAnswers should be true, otherwise false. (uc-cdis/portal#571)
    • Windmill lists unmapped files by checking Indexd. Before centralized auth's deployment, a file was determined to be unmapped by checking if the acl field was null. After centralized auth, we use the authz field instead. The new manifest configuration setting use_indexd_authz in the global block specifies which of the two fields should be used. This field defaults to false. (uc-cdis/portal#570)
    • Deployed in https://qa-canine.planx-pla.net with fence version < 3, index authz field set to false (uc-cdis/portal#570)
    • (by default). (uc-cdis/portal#570)
    • Deployed in https://qa-brain.planx-pla.net with fence version > 3, index authz field set to true. (uc-cdis/portal#570)
    • New portal configuration and images for AnVIL (uc-cdis/portal#569)
    • Requires a url to be specified in dataExplorerConfig called terraExportURL (uc-cdis/portal#568)
    • This should be bvdp-saturn-${env}.appspot.com/#import-data, where ${env} is dev, staging, or prod (uc-cdis/portal#568)
    • Needs a version of cloud-automation that exposes arborist's auth/proxy endpoint (uc-cdis/portal#565)
    • fixed DAT requires Guppy >= 0.3.1 (uc-cdis/portal#563)
    • DAT requires Guppy >= 0.3.0 (uc-cdis/portal#561)
    • This change requires sower version >= 0.3.0. (uc-cdis/portal#562)
    • This PR requires feat/support is not op for filter guppy#45 (0.2.1+) if want to use Guppy for NIAID (uc-cdis/portal#558)
    • require fileExplorerConfig block with buttons (uc-cdis/portal#554)
  • sheepdog
  • spark
    • (uc-cdis/spark#11)
    • (uc-cdis/spark#10)
  • wts
    • use the latest version of the python 3 base image (uc-cdis/wts#14)

@PlanXCyborg
Copy link
Contributor

caninedc.org/manifest.json

Deployment changes

  • arborist
  • fence
  • guppy
  • indexd
  • peregrine
  • pidgin
  • portal
    • New optional title parameter in Terra Export Warning configuration: terraExportWarning: { subjectThreshold: int, title: string(optional), message: string(optional) } (uc-cdis/portal#656)
    • Added terraExportWarning: { subjectThreshold: <number>, message: <string, optional> } to portal config. (uc-cdis/portal#642)
    • New optional portal config flag: dataExplorerConfig.terraTemplate. The value of this parameter is placed in the Terra export URL as the value of the query parameter 'template'. (uc-cdis/portal#645)
    • InCommon login needs fence 4.8.0 (uc-cdis/portal#595)
    • Need Guppy 0.3.7+ to handle large file size (uc-cdis/portal#603)
    • if deployed with "useArboristUI": true, needs Arborist's GET /auth/mapping endpoint to be exposed via revproxy. (useArboristUI false by default) (uc-cdis/portal#592)
    • New optional portal config field called adminPreAppliedFilters. Goes in data/config/*.json. (uc-cdis/portal#576)
    • For a "cert" if the required document is a quiz, then hasCorrectAnswers should be true, otherwise false. (uc-cdis/portal#571)
    • Windmill lists unmapped files by checking Indexd. Before centralized auth's deployment, a file was determined to be unmapped by checking if the acl field was null. After centralized auth, we use the authz field instead. The new manifest configuration setting use_indexd_authz in the global block specifies which of the two fields should be used. This field defaults to false. (uc-cdis/portal#570)
    • Deployed in https://qa-canine.planx-pla.net with fence version < 3, index authz field set to false (uc-cdis/portal#570)
    • (by default). (uc-cdis/portal#570)
    • Deployed in https://qa-brain.planx-pla.net with fence version > 3, index authz field set to true. (uc-cdis/portal#570)
    • New portal configuration and images for AnVIL (uc-cdis/portal#569)
    • Requires a url to be specified in dataExplorerConfig called terraExportURL (uc-cdis/portal#568)
    • This should be bvdp-saturn-${env}.appspot.com/#import-data, where ${env} is dev, staging, or prod (uc-cdis/portal#568)
    • Needs a version of cloud-automation that exposes arborist's auth/proxy endpoint (uc-cdis/portal#565)
    • fixed DAT requires Guppy >= 0.3.1 (uc-cdis/portal#563)
    • DAT requires Guppy >= 0.3.0 (uc-cdis/portal#561)
    • This change requires sower version >= 0.3.0. (uc-cdis/portal#562)
    • This PR requires feat/support is not op for filter guppy#45 (0.2.1+) if want to use Guppy for NIAID (uc-cdis/portal#558)
    • require fileExplorerConfig block with buttons (uc-cdis/portal#554)
  • sheepdog
  • spark
    • (uc-cdis/spark#11)
    • (uc-cdis/spark#10)
  • wts
    • use the latest version of the python 3 base image (uc-cdis/wts#14)

@themarcelor themarcelor requested a review from haraprasadj March 18, 2020 13:30
haraprasadj
haraprasadj approved these changes Mar 18, 2020
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LGTM

@themarcelor themarcelor merged commit c00eeb8 into master Mar 18, 2020
@themarcelor themarcelor deleted the chore/update_caninedc_march_release branch March 18, 2020 13:59
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@haraprasadj haraprasadj haraprasadj approved these changes

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@themarcelor @PlanXCyborg @haraprasadj