Phylogeographic workflow using sliding-windows, RAxML-NG and FastTree
GPU accllerated program for Neighbor-Joining algorithm of Biopython library with PyCUDA
For Species Tree estimation using similarity matrix, distance matrix and NJ (FastME)
Nei-Saitou neighbor-joining algorithm for phylogeny construction/inference. Neighbor joining is a bottom-up (agglomerative) clustering method for the creation of phylogenetic/evolutionary trees.
Python tool for relative mutation rate of different genes across viral strains.
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