tools for genetic genealogy and the analysis of consumer DNA test results

Bayesian genotyper for structural variants

mgatk: mitochondrial genome analysis toolkit

PLINK reader for Python.

A Python package for pharmacogenomics (PGx) research

Support Vector Structural Variation Genotyper

A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data

all methods related to Enterobase

SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.

This python script detects known traits in raw human genetic data.

GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.

Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.

Modeling and Analysis of (Statistical) Genetics data in python

Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C

A simple python library to identify the most likely strain from the population

Your genome report

Collecting Genotypes from ENA and make their SNPs

Pipeline with lots of user input for processing SNP data towards ADMIXTURE and/or imputation

A bioinformatics tool for detecting defects in HIV-1 proviral sequences.

Predict height by gender and genotypes using machine learning.