TheiaCoV Flu optimizations #2339

Job	Run time
Check for changes	9s
wf_theiacov_clearlabs miniwdl	5m 55s
wf_theiacov_clearlabs cromwell	8m 26s
wf_theiacov_fasta miniwdl	3m 24s
wf_theiacov_fasta cromwell	2m 47s
wf_theiacov_illumina_pe miniwdl	5m 11s
wf_theiacov_illumina_pe cromwell	8m 34s
wf_theiacov_illumina_se miniwdl	5m 54s
wf_theiacov_illumina_se cromwell	9m 48s
wf_theiacov_ont miniwdl	9m 14s
wf_theiacov_ont cromwell	15m 39s
	1h 15m 1s

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