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@theiagen

Theiagen Genomics

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  1. public_health_bioinformatics public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    WDL 48 18

  2. public_health_viral_genomics public_health_viral_genomics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2

    WDL 41 17

  3. public_health_bacterial_genomics public_health_bacterial_genomics Public

    WDL 26 14

Repositories

Showing 10 of 37 repositories
  • Northeast-SDP4PHB-2025 Public

    About Resource for Northeast's Software Development Practices for Public Health Bioinformatics 2025 Training Event

    theiagen/Northeast-SDP4PHB-2025’s past year of commit activity
    Nextflow 1 GPL-3.0 1 0 7 Updated Mar 10, 2025
  • public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    theiagen/public_health_bioinformatics’s past year of commit activity
    WDL 48 GPL-3.0 18 39 11 Updated Mar 10, 2025
  • theiagen_docker_builds Public
    theiagen/theiagen_docker_builds’s past year of commit activity
    Dockerfile 3 0 1 2 Updated Mar 10, 2025
  • mercury Public

    Mercury prepares and formats metadata for submission to national & international genomic databases.

    theiagen/mercury’s past year of commit activity
    Python 4 GPL-3.0 0 0 1 Updated Mar 7, 2025
  • RefNAAP-wdl Public

    WDL wrapper around https://github.com/jiangweiyao/RefNAAP

    theiagen/RefNAAP-wdl’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 7, 2025
  • tbp-parser Public

    A TBProfiler output parser used to classify the severity of Mycobacterium tuberculosis mutations.

    theiagen/tbp-parser’s past year of commit activity
    Python 5 GPL-3.0 0 0 0 Updated Mar 6, 2025
  • fiss Public Forked from broadinstitute/fiss

    FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine

    theiagen/fiss’s past year of commit activity
    Python 0 BSD-3-Clause 27 0 0 Updated Mar 1, 2025
  • Mid-Atlantic-SDP4PHB-2025 Public

    Resource for Mid-Atlantic's Software Development Practices for Public Health Bioinformatics 2025 Training Event

    theiagen/Mid-Atlantic-SDP4PHB-2025’s past year of commit activity
    Nextflow 5 GPL-3.0 1 0 10 Updated Feb 27, 2025
  • OHDL-AR-wdl Public

    OHDL_AR Workflow wrapped in WDL

    theiagen/OHDL-AR-wdl’s past year of commit activity
    WDL 0 0 0 0 Updated Feb 24, 2025
  • utilities Public

    A collection of general utility scripts

    theiagen/utilities’s past year of commit activity
    Python 1 AGPL-3.0 0 0 0 Updated Feb 24, 2025
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