TheiaCoV Flu optimizations #2334

Job	Run time
Check for changes	7s
wf_theiacov_clearlabs miniwdl	7m 7s
wf_theiacov_ont cromwell	12m 36s
wf_theiacov_illumina_se miniwdl	6m 38s
wf_theiacov_illumina_pe miniwdl	6m 8s
wf_theiacov_illumina_pe cromwell	8m 42s
wf_theiacov_illumina_se cromwell	8m 36s
wf_theiacov_fasta cromwell	3m 41s
wf_theiacov_fasta miniwdl	2m 15s
wf_theiacov_ont miniwdl	8m 46s
wf_theiacov_clearlabs cromwell	8m 26s
	1h 13m 2s

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