SBC (rebuild) #424
Annotations
1 warning
|
Build and check binaries:
SBC#L1
Check: dependencies in R code, Result: WARNING
'::' or ':::' imports not declared from:
‘cachem’ ‘future’ ‘HistogramTools’ ‘rjags’ ‘rlang’ ‘scales’
‘spatstat.geom’
Namespaces in Imports field not imported from:
‘abind’ ‘R6’ ‘stringi’
All declared Imports should be used.
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
‘capture_all_outputs’ ‘compute_SBC_single’
Check: S3 generic/method consistency, Result: WARNING
plot_coverage_diff:
function(x, variables, prob, interval_type, parameters, max_points)
plot_coverage_diff.SBC_results:
function(x, variables, prob, interval_type, max_points)
plot_rank_hist:
function(x, variables, bins, prob, ..., parameters)
plot_rank_hist.SBC_results:
function(x, variables, bins, prob, parameters)
plot_rank_hist:
function(x, variables, bins, prob, ..., parameters)
plot_rank_hist.data.frame:
function(x, variables, bins, prob, max_rank, parameters)
print:
function(x, ...)
print.SBC_nuts_diagnostics_summary:
function(x)
print:
function(x, ...)
print.SBC_results_summary:
function(x)
print:
function(x, ...)
print.SBC_diagnostic_messages:
function(x, include_ok, print_func)
summary:
function(object, ...)
summary.SBC_results:
function(x)
summary:
function(object, ...)
summary.SBC_nuts_diagnostics:
function(diagnostics)
summary:
function(object, ...)
summary.SBC_RStanOptimizing_diagnostics:
function(x)
summary:
function(object, ...)
summary.SBC_ADVI_diagnostics:
function(x)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Check: Rd cross-references, Result: WARNING
Package unavailable to check Rd xrefs: ‘rjags’
Missing link(s) in Rd file 'combine-functions.Rd':
‘ECDF-plots’
Missing link(s) in Rd file 'ECDF-plots.Rd':
‘combine-functions’
See section 'Cross-references' in the 'Writing R Extensions' manual.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
combine-functions.Rd: ECDF-plots
ECDF-plots.Rd: combine-functions
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Check: for missing documentation entries, Result: WARNING
Undocumented code objects:
‘calculate_sds_draws_matrix’ ‘draws_rvars_to_standata’
‘draws_rvars_to_standata_single’ ‘SBC_backend_mock_rng’
‘SBC_diagnostic_messages’ ‘validate_SBC_datasets’
‘validate_SBC_results’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Check: Rd \usage sections, Result: WARNING
Undocumented arguments in Rd file 'SBC_backend_brms_from_generator.Rd'
‘generator’ ‘...’
Undocumented arguments in Rd file 'SBC_backend_default_thin_ranks.Rd'
‘backend’
Undocumented arguments in Rd file 'SBC_backend_hash_for_cache.Rd'
‘backend’
Undocumented arguments in Rd file 'SBC_backend_mock.Rd'
‘output’ ‘message’ ‘warning’ ‘error’
Undocumented arguments in Rd file 'SBC_fit.Rd'
‘backend’ ‘generated’ ‘cores’
Undocumented arguments in Rd file 'SBC_fit_to_draws_matrix.Rd'
‘fit’
Undocumented arguments in Rd file 'SBC_print_example_model.Rd'
‘interface’
Undocumented arguments in Rd file 'SBC_results.Rd'
‘stats’ ‘fits’ ‘backend_diagnostics’ ‘default_diagnostics’ ‘outputs’
‘messages’ ‘warnings’ ‘errors’
Undocumented arguments in Rd file 'SBC_statistics_from_single_fit.Rd'
‘fit’ ‘variables’ ‘generated’
Undocumented arguments in Rd file 'bind_derived_quantities.Rd'
‘dq1’ ‘dq2’
Undocumented arguments in Rd file 'bind_globals.Rd'
‘globals1’ ‘globals2’
Undocumented arguments in Rd file 'calculate_prior_sd.Rd'
‘datasets’
Undocumented arguments in Rd file 'check_all_SBC_diagnostics.Rd'
‘x’
Undocumented arguments in Rd file 'combine_args.
|
Loading