* creating vignettes ... ERROR Setting r-universe rmarkdown theme... --- re-building ‘SBC.Rmd’ using rmarkdown Loading required package: rmarkdown Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... --- finished re-building ‘SBC.Rmd’ --- re-building ‘bad_parametrization.Rmd’ using rmarkdown --- finished re-building ‘bad_parametrization.Rmd’ --- re-building ‘brms.Rmd’ using rmarkdown Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... --- finished re-building ‘brms.Rmd’ --- re-building ‘computational_algorithm1.Rmd’ using rmarkdown Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... --- finished re-building ‘computational_algorithm1.Rmd’ --- re-building ‘discrete_vars.Rmd’ using rmarkdown Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Quitting from lines 256-257 [unnamed-chunk-12] (discrete_vars.Rmd) Error: processing vignette 'discrete_vars.Rmd' failed with diagnostics: there is no package called 'rjags' --- failed re-building ‘discrete_vars.Rmd’ --- re-building ‘implementing_backends.Rmd’ using rmarkdown Quitting from lines 169-171 [poisson_ranks] (implementing_backends.Rmd) Error: processing vignette 'implementing_backends.Rmd' failed with diagnostics: The data.frame needs a 'variable' and 'rank' columns --- failed re-building ‘implementing_backends.Rmd’ --- re-building ‘indexing.Rmd’ using rmarkdown --- finished re-building ‘indexing.Rmd’ --- re-building ‘limits_of_SBC.Rmd’ using rmarkdown Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... [WARNING] Could not convert TeX math \mathbf{\mu} \sim MVN(0, \mathbf{\Sigma})\\ y \sim MVN(\mathbf{\mu}, \mathbf{\Sigma})\\ \mathbf{\Sigma} = \left(\begin{matrix} 1 & 0.8 \\ 0.8 & 1 \\ \end{matrix}\right) , rendering as TeX: \mathbf{\mu} \sim MVN(0, \mathbf{\Sigma} ^ unexpected control sequence \\ expecting "%", "\\label", "\\tag", "\\nonumber", whitespace or "\\allowbreak" --- finished re-building ‘limits_of_SBC.Rmd’ --- re-building ‘rank_visualizations.Rmd’ using rmarkdown --- finished re-building ‘rank_visualizations.Rmd’ --- re-building ‘rejection_sampling.Rmd’ using rmarkdown Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... [WARNING] Could not convert TeX math \begin{equation} \pi(\theta | y, a = 1) = \frac{\pi(a = 1 | y) \pi(y | \theta)\pi(\theta)}{\int_\Theta \mathrm{d}\tilde\theta \: \pi(a = 1 | y) \pi(y | \tilde\theta)\pi(\tilde\theta)} = \frac{\pi(y | \theta)\pi(\theta)}{\int_\Theta \mathrm{d}\tilde\theta \: \pi(y | \tilde\theta)\pi(\tilde\theta)} = \pi(\theta | y) \end{equation} , rendering as TeX --- finished re-building ‘rejection_sampling.Rmd’ --- re-building ‘small_model_workflow.Rmd’ using rmarkdown Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... Setting r-universe rmarkdown theme... --- finished re-building ‘small_model_workflow.Rmd’ SUMMARY: processing the following files failed: ‘discrete_vars.Rmd’ ‘implementing_backends.Rmd’ Error: Vignette re-building failed. Execution halted If this is expected, consider precomputing your vignettes: https://ropensci.org/blog/2019/12/08/precompute-vignettes/