ENH: Semantic Type for fetch-busco-db output

[Sann5]

What's new

• This PR creates a new ST for the fetch-busco-db an action that I am developing for the bokulich-lab/q2-moshpit plugin.
• Said action downloads some data to be used in the evaluate-busco action which is already implemented.
• This PR was pending in the q2-types-genomics plugin but since there was a migration to q2-types here we are. Therefore it closes ENH: Semantic Type for fetch-busco-db's output bokulich-lab/q2-types-genomics#74 and ENH: Semantic Type for fetch-busco-db output bokulich-lab/q2-types-genomics#75

Run it locally

1. Assuming you have a working environment and a local copy of q2-types

conda activate <your_env>
conda install -c conda-forge -c bioconda busco=5.5.1
cd <path_to>/q2-types
gh pr checkout 312

2. Let's get you some data to play with:

cd <wherever_you_want_to_download_the_data_to>

busco --download "virus"
cd ..

FYI I can't run busco from the visual code terminal (it can find it), only from i-term.

3. Test it out!

qiime tools import --input-path wherever_you_want_to_download_the_data_to --output-path busco_db.qza --type "ReferenceDB[BuscoDB]"

Running the tests

pytest -W ignore -vv --pyargs q2_types

[Sann5]

@misialq idk if you can review this here, but it's the pending PR in q2-types-genomics

[Sann5]

Hey @misialq. Do you think we can merge this? Or should I rather transfer it to q2-moshpit? In any case, Im working now on the corresponding actions so it would be good to merge it so nothing is blocked.

[misialq]

Hey @Sann5, after our recent chat on the other PR I think it maybe would be better if we had it back in moshpit... This will never be used by anything else anyways so we can also just keep it contained there - sorry about that! 🙇