Skip to content
@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

Pinned Loading

  1. qiime2 qiime2 Public

    Official repository for the QIIME 2 framework.

    Python 483 242

  2. distributions distributions Public

    Makefile 1 5

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 24

  4. docs docs Public

    Python 21 58

Repositories

Showing 10 of 74 repositories
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 1 3 0 Updated Jan 15, 2025
  • qiime2 Public

    Official repository for the QIIME 2 framework.

    qiime2/qiime2’s past year of commit activity
    Python 483 BSD-3-Clause 242 63 (5 issues need help) 7 Updated Jan 14, 2025
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 1 BSD-3-Clause 5 5 1 Updated Jan 14, 2025
  • q2-dada2 Public

    QIIME 2 plugin wrapping DADA2

    qiime2/q2-dada2’s past year of commit activity
    Python 20 BSD-3-Clause 37 11 3 Updated Jan 13, 2025
  • q2-cutadapt Public
    qiime2/q2-cutadapt’s past year of commit activity
    Python 3 BSD-3-Clause 18 3 1 Updated Jan 13, 2025
  • qiime2/q2-composition’s past year of commit activity
    Python 6 BSD-3-Clause 27 7 2 Updated Jan 13, 2025
  • docs Public
    qiime2/docs’s past year of commit activity
    Python 21 BSD-3-Clause 58 31 (1 issue needs help) 0 Updated Jan 10, 2025
  • qiime2/action-library-packaging’s past year of commit activity
    Python 0 BSD-3-Clause 5 0 1 Updated Jan 10, 2025
  • q2-types Public
    qiime2/q2-types’s past year of commit activity
    Python 17 BSD-3-Clause 41 26 (3 issues need help) 3 Updated Jan 9, 2025
  • q2-vsearch Public

    vsearch plugin for QIIME 2

    qiime2/q2-vsearch’s past year of commit activity
    Python 6 BSD-3-Clause 20 10 2 Updated Jan 8, 2025