Add -quality option to bfconvert

[melissalinkert]

Fixes #3370.

Builds on work in ome/ome-codecs#26 to pass a quality value (0.0 to 1.0) through to the JPEG codec. This can be tested by comparing conversions with different quality values, e.g.:

$ bfconvert -compression JPEG -quality 0.1 test.fake test_10percent.tiff
$ bfconvert -compression JPEG -quality 0.5 test.fake test_50percent.tiff
$ bfconvert -compression JPEG -quality 1.0 test.fake test_100percent.tiff

and different output formats (TIFF, OME-TIFF, DICOM). The output file size should increase as the quality increases.

Note that the JPEG writer does not currently make use of this, as it bypasses the JPEGCodec API.

Adding to 7.3.0 for now, but we can also push to 8.0.0 if this seems more suited to a major version.

[sbesson]

From the HEAD of the branch, executing the following conversion commands

./tools/bfconvert -compression JPEG test.fake test_jpg.tiff
./tools/bfconvert -compression JPEG test.fake test_jpg.ome.tiff
./tools/bfconvert -compression JPEG test.fake test_jpg.dcm
./tools/bfconvert -compression "JPEG-2000 Lossy" test.fake test_j2k.tiff
./tools/bfconvert -compression "JPEG-2000 Lossy" test.fake test_j2k.ome.tiff
./tools/bfconvert -compression JPEG -quality 0.1 test.fake test_jpg_10percent.tiff
./tools/bfconvert -compression JPEG -quality 0.5 test.fake test_jpg_50percent.tiff
./tools/bfconvert -compression JPEG -quality 1.0 test.fake test_jpg_100percent.tiff
./tools/bfconvert -compression JPEG -quality 0.1 test.fake test_jpg_10percent.ome.tiff
./tools/bfconvert -compression JPEG -quality 0.5 test.fake test_jpg_50percent.ome.tiff
./tools/bfconvert -compression JPEG -quality 1.0 test.fake test_jpg_100percent.ome.tiff
./tools/bfconvert -compression JPEG -quality 0.1 test.fake test_jpg_10percent.dcm
./tools/bfconvert -compression JPEG -quality 0.5 test.fake test_jpg_50percent.dcm
./tools/bfconvert -compression "JPEG-2000 Lossy" -quality 5.0 test.fake test_j2k_quality5.tiff
./tools/bfconvert -compression "JPEG-2000 Lossy" -quality 100.0 test.fake test_j2k_quality100.tiff
./tools/bfconvert -compression "JPEG-2000 Lossy" -quality 5.0 test.fake test_j2k_quality5.ome.tiff
./tools/bfconvert -compression "JPEG-2000 Lossy" -quality 100.0 test.fake test_j2k_quality100.ome.tiff

produced the following output

-rw-r--r--  1 sbesson  staff   132K 10 Apr 08:59 test_j2k.ome.tiff
-rw-r--r--  1 sbesson  staff   131K 10 Apr 08:59 test_j2k.tiff
-rw-r--r--  1 sbesson  staff   132K 10 Apr 08:59 test_j2k_quality100.ome.tiff
-rw-r--r--  1 sbesson  staff   131K 10 Apr 08:59 test_j2k_quality100.tiff
-rw-r--r--  1 sbesson  staff   129K 10 Apr 08:59 test_j2k_quality5.ome.tiff
-rw-r--r--  1 sbesson  staff   128K 10 Apr 08:59 test_j2k_quality5.tiff
-rw-r--r--  1 sbesson  staff    10K 10 Apr 08:59 test_jpg.dcm
-rw-r--r--  1 sbesson  staff   231K 10 Apr 08:59 test_jpg.ome.tiff
-rw-r--r--  1 sbesson  staff   230K 10 Apr 08:59 test_jpg.tiff
-rw-r--r--  1 sbesson  staff   363K 10 Apr 08:59 test_jpg_100percent.ome.tiff
-rw-r--r--  1 sbesson  staff   362K 10 Apr 08:59 test_jpg_100percent.tiff
-rw-r--r--  1 sbesson  staff   8.6K 10 Apr 08:59 test_jpg_10percent.dcm
-rw-r--r--  1 sbesson  staff   219K 10 Apr 08:59 test_jpg_10percent.ome.tiff
-rw-r--r--  1 sbesson  staff   218K 10 Apr 08:59 test_jpg_10percent.tiff
-rw-r--r--  1 sbesson  staff   9.7K 10 Apr 08:59 test_jpg_50percent.dcm
-rw-r--r--  1 sbesson  staff   227K 10 Apr 08:59 test_jpg_50percent.ome.tiff
-rw-r--r--  1 sbesson  staff   226K 10 Apr 08:59 test_jpg_50percent.tiff

For both JPEG and JPEG-2000 lossy when the target format supports it, the quality level passed to the utility is properly respected.

Additionally, the DICOM writer now allows to set options when using JPEG compression. As mentioned on Monday, the only outstanding todo is probably to document the new option in https://github.com/ome/bio-formats-documentation for the upcoming 7.3.0 release