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Add maisi mask aug example (Project-MONAI#1748)
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Fixes # .

### Description
Add notebook example for tumor mask augmentation.

### Checks
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [ ] Avoid including large-size files in the PR.
- [ ] Clean up long text outputs from code cells in the notebook.
- [ ] For security purposes, please check the contents and remove any
sensitive info such as user names and private key.
- [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use
relative paths for tutorial repo files (3) put figure and graphs in the
`./figure` folder
- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`

---------

Signed-off-by: Pengfei Guo <pengfeig@nvidia.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
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3 people authored Jul 4, 2024
1 parent cb1c1f3 commit 8857a5c
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342 changes: 342 additions & 0 deletions generative/maisi/data/mask_augmentation_example.ipynb

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1 change: 1 addition & 0 deletions runner.sh
Original file line number Diff line number Diff line change
Expand Up @@ -77,6 +77,7 @@ doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" 02_mednist_classifi
doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" 03_mednist_classification_v2.ipynb)
doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" 04_integrating_code.ipynb)
doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" bending_energy_diffusion_loss_notes.ipynb)
doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" mask_augmentation_example.ipynb)

# Execution of the notebook in these folders / with the filename cannot be automated
skip_run_papermill=()
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