Add maisi mask aug example

[guopengf]

Fixes # .

Description

Add notebook example for tumor mask augmentation.

Checks

• Avoid including large-size files in the PR.
• Clean up long text outputs from code cells in the notebook.
• For security purposes, please check the contents and remove any sensitive info such as user names and private key.
• Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the ./figure folder
• Notebook runs automatically ./runner.sh -t <path to .ipynb file>

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[guopengf]

Hi @KumoLiu, I plan to add an example mask as tutorials/generative/maisi/data/example_mask.nii.gz. Where should I host this file? Shall I put it into https://github.com/Project-MONAI/MONAI-extra-test-data/releases/tag/0.8.1?

[KumoLiu]

Hi @KumoLiu, I plan to add an example mask as tutorials/generative/maisi/data/example_mask.nii.gz. Where should I host this file? Shall I put it into https://github.com/Project-MONAI/MONAI-extra-test-data/releases/tag/0.8.1?

Yes, you can host it there.

[guopengf]

I think we have this error (https://github.com/Project-MONAI/tutorials/actions/runs/9764583292/job/26953264670?pr=1748) because some utility functions have not been merged. So I make it a draft PR first.

[guopengf]

This PR is ready for review once #1749 is merged.

[KumoLiu]

@guopengf seems premerge can not pass, did you run the notebook locally?

[guopengf]

@guopengf seems premerge can not pass, did you run the notebook locally?

Yeah, I can successfully run it locally, as you can see those cell outputs. However, the augmentation functions rely on latest monai core dev branch. I don’t know if this causes problems.

[KumoLiu]

Hi @guopengf,
Could you please add the file here https://github.com/Project-MONAI/tutorials/blob/main/runner.sh#L79 to exclude max_epochs check? Thanks.
https://github.com/Project-MONAI/tutorials/actions/runs/9788615557/job/27026970836?pr=1748#step:5:610

[guopengf]

Hi @guopengf, Could you please add the file here https://github.com/Project-MONAI/tutorials/blob/main/runner.sh#L79 to exclude max_epochs check? Thanks. https://github.com/Project-MONAI/tutorials/actions/runs/9788615557/job/27026970836?pr=1748#step:5:610

Hi @KumoLiu, thanks for the instruction! All tests are passed.

[KumoLiu]

LGTM.
If you don't have other comments, I will merge this one. cc @Nic-Ma @mingxin-zheng