🧹🚇 Clean up CI

.github/workflows/CI_CD_actions.yml

@@ -17,7 +17,7 @@ jobs:
       - name: Check out repo
         uses: actions/checkout@v4
       - name: Set up Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: "3.10"
       - name: Run pre-commit
@@ -33,7 +33,7 @@ jobs:
           conda-channels: conda-forge
           activate-conda: false
       - name: Set up Python 3.10
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: "3.10"
       - name: Install dependencies
@@ -58,7 +58,7 @@ jobs:
           conda-channels: conda-forge
           activate-conda: false
       - name: Set up Python 3.10
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: "3.10"
       - name: Install dependencies
@@ -81,7 +81,7 @@ jobs:
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python 3.10
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: "3.10"
       - name: Install dependencies
@@ -106,7 +106,7 @@ jobs:
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
       - name: Install dependencies
@@ -121,23 +121,21 @@ jobs:
           python -m pytest --cov=./ --cov-report term --cov-report xml --cov-config pyproject.toml tests
 
       - name: Codecov Upload
-        uses: codecov/codecov-action@v3
+        uses: codecov/codecov-action@v4
         with:
           file: ./coverage.xml
+          token: ${{ secrets.CODECOV_TOKEN }}
 
   deploy:
     runs-on: ubuntu-latest
     if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
     needs: [test, docs, docs-notebooks]
-    environment:
-      name: pypi
-      url: https://pypi.org/p/pyglotaran
     permissions:
       id-token: write # IMPORTANT: this permission is mandatory for trusted publishing
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python 3.10
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: "3.10"
 

.github/workflows/autoupdate-pre-commit-config.yml

@@ -14,8 +14,8 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Set up Python
-        uses: actions/setup-python@v4
-      - uses: actions/cache@v3
+        uses: actions/setup-python@v5
+      - uses: actions/cache@v4
         with:
           path: ~/.cache/pre-commit
           key: pre-commit-autoupdate

.github/workflows/doxygen.yml

@@ -18,7 +18,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Set up Python 3.10
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: "3.10"
       - name: Install dependencies