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Sequence Data

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Robert J. Gifford edited this page Nov 27, 2024 · 7 revisions

Sequences contained within the project repository.

The 'sources' directory contains the following sequence sets:

  • ncbi-master-refseqs: The 'master' references for each DENV serotype, in GenBank XML format

  • fasta-refseqs-yale-denv1: Reference sequences for DENV1 lineages, in FASTA format.

  • fasta-refseqs-yale-denv2: Reference sequences for DENV2 lineages, in FASTA format.

  • fasta-refseqs-yale-denv3: Reference sequences for DENV3 lineages, in FASTA format.

  • fasta-refseqs-yale-denv4: Reference sequences for DENV4 lineages, in FASTA format.

  • fasta-testseqs-denv1: Test sequences for DENV1 lineages, in FASTA format.

  • fasta-testseqs-denv2: Test sequences for DENV2 lineages, in FASTA format.

  • fasta-testseqs-denv3: Test sequences for DENV3 lineages, in FASTA format.

  • fasta-testseqs-denv4: Test sequences for DENV4 lineages, in FASTA format.

Dengue GLUE

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External Reference

  1. Dengue Lineages Project

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