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Constrained Alignment Tree

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Robert J. Gifford edited this page Sep 21, 2024 · 1 revision

Separate alignment trees were constructed for each DENV serotype.

The alignment trees are defined here.

Dengue GLUE

Overview & Installation

  1. Home
  2. Background
  3. Requirements
  4. Native Installation
  5. Docker Installation
  6. Usage

Dengue Core Project

  1. Database Schema
  2. Project Data

Dengue NCBI Extension

  1. Install Options
  2. NCBI Project Data

Usage

  1. Interacting with Dengue-GLUE
  2. Sequences
  3. Alignments
  4. Serotype Recognition
  5. Genotyping Tools
  6. Mutation Frequencies

External Reference

  1. Dengue Lineages Project

The GLUE Framework

User Guide

  1. Project Data Model
  2. Schema Extensions
  3. Modules
  4. Alignments
  5. Variations
  6. Scripting Layer
  7. Freemarker Templates

Command Reference

  1. Command Mode Reference
  2. Mode Non-Specific Commands
  3. Module Type Reference
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