GAVariant missing "quality" and "filter"

[jrobinso]

Hi, the v0.5.1 GAVariant specification does not list the "filter" and "quality" fields, which are part of the VCF specification. However, variants I fetch from https://www.googleapis.com/genomics/v1beta2/variants/search do include them. Is this a mistake in the specification, or are these fields no longer required?

[johntbates]

Hi, Jim.

You're correct: the GAVariant schema lacks those fields, despite the fact that the Google v1beta2 implementation returns them. This appears to be an oversight in the specification and I'll be submitting a pull request to address this. Thank you for pointing it out!

-John Bates

[skeenan]

This has been dormant since January. Closing in 2 days.

[jeromekelleher]

There is still a PR open (#220) for this, so I don't think we should close it. Perhaps we should ping those involved and try to get the PR updated?

[skeenan]

Thanks @jeromekelleher I've pinged @johntbates in #220

[david4096]

Closed with #826