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Merge origin/master in#6

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ryan-williams wants to merge 9 commits intofnothaft:utils-0.2.0fnothaft/adam:utils-0.2.0from ryan-williams:utilsryan-williams/adam:utilsCopy head branch name to clipboard

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Commits on May 4, 2015

• - fixed pattern matching bug in ReferenceUtils.unionReferenceSet

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  tmoerman

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• now with proper header ./scripts/format-source

  tmoerman

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• Merge pull request bigdatagenomics#671 from tmoerman/master

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  fnothaft

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• [ADAM-410] add alphabet class and test to address issue bigdatagenomics#410

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  bryanjj

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  fnothaft

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• [ADAM-663] don't remove CLI jar in compute-adam-jars.sh

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  ryan-williams

  authored and

  laserson

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• [ADAM-597] Move correction out of ADAM and into a downstream project.

  fnothaft

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• Merge pull request bigdatagenomics#668 from fnothaft/remove-correction

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  laserson

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Commits on May 26, 2015

• Merge remote-tracking branch 'origin/master' into utils

  ryan-williams

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• remove a couple of unused imports

  ryan-williams

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