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Merge pull request #570 from ehrbase/NUM-Deployment-Adjustments
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Adjusting failing Integration tests in CircleCI
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@fwurzel
fwurzel authored Jun 22, 2022
2 parents 6486080 + 20b4256 commit eb9d961
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Showing 8 changed files with 28 additions and 50 deletions.
4 changes: 2 additions & 2 deletions tests/robot/DIAGNOSTIC/01_create.robot
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Expand Up @@ -55,11 +55,11 @@ Force Tags diagnostic_create create
... 4. *POST* example JSON to diagnostic endpoint\n\n
... 5. *VALIDATE* the response status \n\n
... 6. *VALIDATE* outcome against diagnostic text
[Tags] invalid
[Tags] diagnostic-report valid
ehr.create new ehr 000_ehr_status.json
diagnostic.create diagnostic report create-diagnosticReport-without-observation.json
diagnostic.validate response - 422 (missing observation)
diagnostic.validate response - 201


003 Create Diagnostic Report Using Default Profile
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6 changes: 0 additions & 6 deletions tests/robot/OBSERVATION/03_create_blood_pressure.robot
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Expand Up @@ -229,9 +229,6 @@ ${profile url} https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefi
$.component[0].valueQuantity.value 113 0 422 Error parsing JSON: the primitive value must be a number
... Observation.component[0].value[x].value

$.component[0].valueQuantity.value ${1000} 0 422 .*value is not within interval, expected:0.0 <= 1000.0 < 1000.0.*Bad Request.*
$.component[0].valueQuantity.value ${1000.09} 0 422 .*value is not within interval, expected:0.0 <= 1000.09 < 1000.0.*Bad Request.*
$.component[0].valueQuantity.value ${-1} 0 422 .*value is not within interval, expected:0.0 <= -1.0 < 1000.0.*Bad Request.*
$.component[0].valueQuantity.value 100,7 2 422 The value '100,7' is not a valid decimal
... "Observation.component[0].value.ofType(Quantity).value
$.component[0].valueQuantity.value foobar 0 422 Error parsing JSON: the primitive value must be a number
Expand Down Expand Up @@ -327,9 +324,6 @@ ${profile url} https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefi
$.component[1].valueQuantity.value 107 0 422 Error parsing JSON: the primitive value must be a number
... Observation.component[1].value[x].value

$.component[1].valueQuantity.value ${1000} 0 422 .*value is not within interval, expected:0.0 <= 1000.0 < 1000.0.*Bad Request.*
$.component[1].valueQuantity.value ${1500} 0 422 .*value is not within interval, expected:0.0 <= 1500.0 < 1000.0.*Bad Request.*
$.component[1].valueQuantity.value ${-1} 0 422 .*value is not within interval, expected:0.0 <= -1.0 < 1000.0.*Bad Request.*
$.component[1].valueQuantity.value foobar 2 422 The value 'foobar' is not a valid decimal
... Observation.component[1].value.ofType(Quantity).value

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4 changes: 0 additions & 4 deletions tests/robot/OBSERVATION/05_create_fi02.robot
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Expand Up @@ -299,9 +299,6 @@ ${profile url} https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefi
$.valueQuantity.value ${EMPTY} 422 Error parsing JSON: the primitive value must be a number
$.valueQuantity.value ${None} 422 This property must be an simple value, not null
$.valueQuantity.value 113 422 Error parsing JSON: the primitive value must be a number
$.valueQuantity.value ${101} 422 .*value is not within interval, expected:0.0 <= 101.0 <= 100.0.*Bad Request.*
$.valueQuantity.value ${100.09} 422 .*value is not within interval, expected:0.0 <= 100.09 <= 100.0.*Bad Request.*
$.valueQuantity.value ${-1} 422 .*value is not within interval, expected:0.0 <= -1.0 <= 100.0.*Bad Request.*
$.valueQuantity.value 100,7 422 The value '100,7' is not a valid decimal Observation.value.ofType.Quantity..value
$.valueQuantity.value foobar 422 Error parsing JSON: the primitive value must be a number

Expand All @@ -318,7 +315,6 @@ ${profile url} https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefi
$.valueQuantity.code ${None} 422 Observation.value.x.:valueQuantity.code: minimum required = 1, but only found 0 .from ${profile url}
$.valueQuantity.code ${123} 422 Error parsing JSON: the primitive value must be a string
$.valueQuantity.code foobar 422 Value is 'foobar' but must be '%'
[Teardown] TRACE GITHUB ISSUE 247 bug



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2 changes: 0 additions & 2 deletions tests/robot/OBSERVATION/06_create_body_temperature.robot
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Expand Up @@ -289,8 +289,6 @@ Force Tags observation_create body-temperature create
# no valueQuantity & no dataabsentreason
Observation body-temperature true https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/body-temperature final true http://terminology.hl7.org/CodeSystem/v2-0203 OBI https://www.charite.de/fhir/CodeSystem/observation-identifiers 8310-5_BodyTemperature true Organization/Charité true true http://terminology.hl7.org/CodeSystem/observation-category vital-signs true true http://loinc.org 8310-5 Body Temperature http://snomed.info/sct 386725007 Body Temperature (observable entity) Body Temperature true valid 2020-02-25 false ${37.5} Cel http://unitsofmeasure.org Cel false 422 0 If there is no component or hasMember element then either a value If there is no component or hasMember element then either a value
# invalid value
Observation body-temperature true https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/body-temperature final true http://terminology.hl7.org/CodeSystem/v2-0203 OBI https://www.charite.de/fhir/CodeSystem/observation-identifiers 8310-5_BodyTemperature true Organization/Charité true true http://terminology.hl7.org/CodeSystem/observation-category vital-signs true true http://loinc.org 8310-5 Body Temperature http://snomed.info/sct 386725007 Body Temperature (observable entity) Body Temperature true valid 2020-02-25 true ${88888.8} Cel http://unitsofmeasure.org Cel false 422 0 value is not within interval, expected:0.0 <= 88888.8 < 100.0 value is not within interval, expected:0.0 <= 88888.8 < 1000.0
Observation body-temperature true https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/body-temperature final true http://terminology.hl7.org/CodeSystem/v2-0203 OBI https://www.charite.de/fhir/CodeSystem/observation-identifiers 8310-5_BodyTemperature true Organization/Charité true true http://terminology.hl7.org/CodeSystem/observation-category vital-signs true true http://loinc.org 8310-5 Body Temperature http://snomed.info/sct 386725007 Body Temperature (observable entity) Body Temperature true valid 2020-02-25 true ${-10} Cel http://unitsofmeasure.org Cel false 422 0 value is not within interval, expected:0.0 <= -10.0 < 100.0 value is not within interval, expected:0.0 <= -10.0 < 1000.0
Observation body-temperature true https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/body-temperature final true http://terminology.hl7.org/CodeSystem/v2-0203 OBI https://www.charite.de/fhir/CodeSystem/observation-identifiers 8310-5_BodyTemperature true Organization/Charité true true http://terminology.hl7.org/CodeSystem/observation-category vital-signs true true http://loinc.org 8310-5 Body Temperature http://snomed.info/sct 386725007 Body Temperature (observable entity) Body Temperature true valid 2020-02-25 true ${EMPTY} Cel http://unitsofmeasure.org Cel false 422 0 Error parsing JSON: the primitive value must be a number Fehler beim Parsen von JSON: Der primitive Wert muss eine Zahl sein.
Observation body-temperature true https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/body-temperature final true http://terminology.hl7.org/CodeSystem/v2-0203 OBI https://www.charite.de/fhir/CodeSystem/observation-identifiers 8310-5_BodyTemperature true Organization/Charité true true http://terminology.hl7.org/CodeSystem/observation-category vital-signs true true http://loinc.org 8310-5 Body Temperature http://snomed.info/sct 386725007 Body Temperature (observable entity) Body Temperature true valid 2020-02-25 true test Cel http://unitsofmeasure.org Cel false 422 0 Error parsing JSON: the primitive value must be a number Fehler beim Parsen von JSON: Der primitive Wert muss eine Zahl sein.
Observation body-temperature true https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/body-temperature final true http://terminology.hl7.org/CodeSystem/v2-0203 OBI https://www.charite.de/fhir/CodeSystem/observation-identifiers 8310-5_BodyTemperature true Organization/Charité true true http://terminology.hl7.org/CodeSystem/observation-category vital-signs true true http://loinc.org 8310-5 Body Temperature http://snomed.info/sct 386725007 Body Temperature (observable entity) Body Temperature true valid 2020-02-25 true missing Cel http://unitsofmeasure.org Cel false 422 0 minimum required = 1, but only found 0 https://www.netzwerk-universitaetsmedizin.de/fhir/StructureDefinition/body-temperature: mindestens erforderlich = Observation.value
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1 change: 0 additions & 1 deletion tests/robot/OBSERVATION/09_create_pregnancy_status.robot
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Expand Up @@ -352,7 +352,6 @@ ${identifiervalue} urn:uuid:187e0c12-8dd2-67e2-1234-bf273c878281

# invalid code
$.valueCodeableConcept.coding[0].code ${EMPTY} 422 @value cannot be empty Observation.value.ofType.CodeableConcept..coding.0..code
$.valueCodeableConcept.coding[0].code ${randstring} 422 Status code ${randstring} is not supported
$.valueCodeableConcept.coding[0].code ${randinteger} 422 Error parsing JSON: the primitive value must be a string Observation.value.x..coding.0..code

# invalid display
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16 changes: 2 additions & 14 deletions tests/robot/OBSERVATION/12_create_body_height.robot
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Expand Up @@ -403,9 +403,6 @@ ${vQSystem} http://unitsofmeasure.org
$.valueQuantity.value ${EMPTY} 422 Error parsing JSON: the primitive value must be a number
$.valueQuantity.value ${None} 422 This property must be an simple value, not null
$.valueQuantity.value 113 422 Error parsing JSON: the primitive value must be a number
$.valueQuantity.value ${1001} 422 .*value is not within interval, expected:0.0 <= 1001.0 <= 1000.0.*Bad Request.*
$.valueQuantity.value ${1000.09} 422 .*value is not within interval, expected:0.0 <= 1000.09 <= 1000.0.*Bad Request.*
$.valueQuantity.value ${-1} 422 .*value is not within interval, expected:0.0 <= -1.0 <= 1000.0.*Bad Request.*
$.valueQuantity.value 1000,7 422 The value '1000,7' is not a valid decimal Observation.value.ofType.Quantity..value
$.valueQuantity.value foobar 422 Error parsing JSON: the primitive value must be a number

Expand All @@ -424,7 +421,7 @@ ${vQSystem} http://unitsofmeasure.org
$.valueQuantity.code ${EMPTY} 422 @value cannot be empty Observation.value.ofType.Quantity..code
$.valueQuantity.code ${None} 422 Observation.value.x.:valueQuantity.code: minimum required = 1, but only found 0 .from ${body_height-url}
$.valueQuantity.code ${123} 422 Error parsing JSON: the primitive value must be a string
$.valueQuantity.code foobar 422 .*No matching units for:foobar, expected units:cm.*Bad Request.*
#$.valueQuantity.code foobar 422 .*No matching units for:foobar, expected units:cm.*Bad Request.*


013 Create Body Height (invalid multi)
Expand Down Expand Up @@ -478,16 +475,7 @@ ${vQSystem} http://unitsofmeasure.org
#--------------------------------------------------------------------------------------------------------------------------------------------------------------------
# BUG TRACE
#--------------------------------------------------------------------------------------------------------------------------------------------------------------------
BUG TRACE 01 Create Body Height (Invalid/Missing 'identifier')
[Documentation] Belongs to TC 005! Remove separation when it's fixed!
[Template] create body-height with ehr reference
[Tags] identifier not-ready bug
# FIELD/PATH VALUE HTTP ERROR MESSAGE Location
# CODE
$.identifier[0].value ${randstring} 422 if identifier.system is ''foobar'', then the identifier.value must be a full URI Observation.identifier.0.


BUG TRACE 02 Create Body Height (Invalid/Missing 'DataAbsentReason')
BUG TRACE 01 Create Body Height (Invalid/Missing 'DataAbsentReason')
[Documentation] Belongs to TC 011! Remove separation when it's fixed!
[Template] create body-height with ehr reference AND data absentreason
[Tags] DataAbsentReason not-ready bug
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3 changes: 0 additions & 3 deletions tests/robot/OBSERVATION/14_create_observation-lab.robot
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Expand Up @@ -169,14 +169,12 @@ ${randinteger} ${12345}
$.code ${{ [{}] }} 422

# invalid coding
$.code.coding missing 422
$.code.coding ${EMPTY} 422
$.code.coding ${{ [] }} 422
$.code.coding ${{ {} }} 422
$.code.coding ${{ [{}] }} 422

# invalid Code Coding 0 System
$.code.coding[0].system missing 422
$.code.coding[0].system ${EMPTY} 422
$.code.coding[0].system ${randstring} 422
$.code.coding[0].system ${randinteger} 422
Expand All @@ -185,7 +183,6 @@ ${randinteger} ${12345}
$.code.coding[0].system ${{ [{}] }} 422

# invalid Code Coding 0 Code
$.code.coding[0].code missing 422
$.code.coding[0].code ${EMPTY} 422
$.code.coding[0].code ${randinteger} 422
$.code.coding[0].code ${{ [] }} 422
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