Merge pull request #2692 from patrickcleeve2/meteor-969-fix-tfs-rotat…

…ion-metadata [fix] disable scan rotation metadata for tfs
delmic · Mar 12, 2024 · 7bc8eec · 7bc8eec
2 parents 83ec886 + 49de6ab
commit 7bc8eec
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/src/odemis/dataio/tiff.py b/src/odemis/dataio/tiff.py
@@ -2743,7 +2743,8 @@ def _convert_thermo_fisher_to_odemis_metadata(metadata: str) -> dict:
     try:
         # beam metadata
         beam_type = tfs_md["Beam"]["beam"]
-        md[model.MD_ROTATION] = float(tfs_md[beam_type]["scanrotation"])
+        # tmp: disable scan rotation metadata, as it is inconsistent with how odemis displays images
+        md[model.MD_ROTATION] = 0  # float(tfs_md[beam_type]["scanrotation"])
         md[model.MD_EBEAM_VOLTAGE] = float(tfs_md[beam_type]["hv"])
         md[model.MD_EBEAM_CURRENT] = float(tfs_md[beam_type]["beamcurrent"])