fix: disable scan rotation metadata for tfs, due to inconsistency wit…

…h odemis display
delmic · Mar 5, 2024 · 49de6ab · 49de6ab
1 parent 2f3aea7
commit 49de6ab
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/src/odemis/dataio/tiff.py b/src/odemis/dataio/tiff.py
@@ -2743,7 +2743,8 @@ def _convert_thermo_fisher_to_odemis_metadata(metadata: str) -> dict:
     try:
         # beam metadata
         beam_type = tfs_md["Beam"]["beam"]
-        md[model.MD_ROTATION] = float(tfs_md[beam_type]["scanrotation"])
+        # tmp: disable scan rotation metadata, as it is inconsistent with how odemis displays images
+        md[model.MD_ROTATION] = 0  # float(tfs_md[beam_type]["scanrotation"])
         md[model.MD_EBEAM_VOLTAGE] = float(tfs_md[beam_type]["hv"])
         md[model.MD_EBEAM_CURRENT] = float(tfs_md[beam_type]["beamcurrent"])