Pcdc dev #54
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Pcdc dev #54
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* chore(revproxy): increase ga4gh timeout * chore(presigned-url-fence): set 300s uWSGI timeout * chore(presigned-url-fence): set timeout to 60s * docs(presigned-url-fence): add TODOs for timeouts * chore(revproxy): set Fence timeouts to 60s
Genomics Aotearoa Data, GAD and UMCCR AGHA
…ons needed for selenium (uc-cdis#1803) Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis>
* Adding .slack.com to wildcard-whitelist * Update web_whitelist Co-authored-by: Hara Prasad <haraprasadj@uchicago.edu>
Correct the command to run covid19-notebook-etl-cronjob
… with new rds instances (uc-cdis#1809) Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis>
* fix(psql13-dockerfile): Updated dockerfile * fix(psql13-dockerfile): Updated dockerfile * fix(psql13-dockerfile): Updated dockerfile * fix(psql13-dockerfile): Updated dockerfile * fix(psql13-dockerfile): Updated dockerfile Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis>
Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis>
Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis>
…c-cdis#1812) Co-authored-by: Alexander VT <alexander.m.vantol@gmail.com>
* feat(db-upgrade): Created script to upgrade db's * feat(db-upgrade): Created script to upgrade db's * feat(db-upgrade): Created script to upgrade db's * feat(db-upgrade): Created script to upgrade db's Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis>
Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis>
* fix(psqlupgrade-script): Updated the psql upgrade script * fix(psqlupgrade-script): Updated the psql upgrade script Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis>
merge from CTDS
…eraction update pcdcanalysistools_settings
uc-cdis#1741) * feat(update-scaling): Added cli command to quickly update hpa rules on the fly * feat(update-scaling): fixed syntax error Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis> Co-authored-by: Alexander VT <alexander.m.vantol@gmail.com>
* chore: add create-repo command to ECR script * fix
sync with master
merge from CTDS
…ery parent env (uc-cdis#1816) Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis>
…stom values (uc-cdis#1823) Co-authored-by: Edward Malinowski <edwardmalinowski@Edwards-MacBook-Pro.local.cdis>
merge from CTDS
uc-cdis#1806) * feat(fence): add new, required ga4gh expiration cronjob (will update to force enabling this once feature in fence is complete) * Update fence-cleanup-expired-ga4gh-info-cronjob.yaml * Update fence-cleanup-expired-ga4gh-info-job.yaml * chore(tests): exclude fence-cleanup jobs from json output test Co-authored-by: Alexander VT <alexander.m.vantol@gmail.com>
Add IAM policy for amazon SSM agents
not the entire workspace directory
* fix(datadog-config): Enabled orchestration monitoring
…required (uc-cdis#1833) Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
…c-cdis#1846) Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
* feat(workflow-asg): Added workflow ASG * feat(workflow-asg): Added workflow ASG * feat(workflow-asg): Added workflow ASG * feat(workflow-asg): Added workflow ASG * feat(workflow-asg): Added workflow ASG Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
* influxdb - fix max_series_per_database limitation * Update influxdb-deployment.yaml * Update influxdb-deployment.yaml
* fix(tf-dependencies): Pinned provider version * fix(tf-dependencies): Pinned provider version * fix(tf-dependencies): Pinned provider version Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
* Update web_wildcard_whitelist
* Add kube-setup-argo * Add argo to revproxy * Use dynamic name for IAM user * Add configurable S3 bucket * Fix revproxy for argo-server * Fix revproxy for argo-server * Add permissions to argo serviceaccount * Add argo to netpolicies * Add argo to netpolicies * fix: allow Argo to use server-side events * fix: use HTTP1 for Argo Co-authored-by: Andrew Prokhorenkov <aprokh@uchicago.edu>
uc-cdis#1861) * feat(python): add 3.9 dockerfile and GH action for building 3.9/10 base images * Update image_build_push.yaml * Update image_build_push.yaml * Update image_build_push.yaml * Update image_build_push.yaml * Update image_build_push.yaml * Update image_build_push.yaml * Update image_build_push.yaml * Update image_build_push.yaml * Update image_build_push.yaml * Update image_build_push.yaml * Update image_build_push.yaml * Update image_build_push.yaml Co-authored-by: Alexander VT <alexander.m.vantol@gmail.com>
* Add netnolimit to revproxy * feat(GPE-293): Added public to argo-wrapper, so that it could be reached by revproxy Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
uc-cdis#1845) * fix(aws-install): Changed directory aws cli is built in because of disk space constraints * fix(aws-install): Changed directory aws cli is built in because of disk space constraints Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
…is#1866) * feat(fips-script): Added scripts for enabling FIPs on adminvms * feat(fips-script): Added scripts for enabling FIPs on adminvms * feat(fips-script): Added scripts for enabling FIPs on adminvms * feat(fips-script): Added scripts for enabling FIPs on adminvms Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
merge from ctds
* Add abililty to use custom FIPS enabled AMI * Add abililty to use custom FIPS enabled AMI * Add SSM policy to workers * Add abililty to use custom FIPS enabled AMI * Update variables.tf * feat(fips_ami): Updated service linked role name, so that it will be unique per commons Co-authored-by: Edward Malinowski <edwardmalinowski@Eds-MacBook-Pro.attlocal.net>
merge from ctds
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