Replacing symbolic test resource links with file copies

adam-apis/src/test/resources/small.sam

@@ -0,0 +1,22 @@
+@SQ	SN:1	LN:249250621
+@SQ	SN:2	LN:243199373
+simread:1:26472783:false	16	1	26472784	60	75M	*	0	0	GTATAAGAGCAGCCTTATTCCTATTTATAATCAGGGTGAAACACCTGTGCCAATGCCAAGACAGGGGTGCCAAGA	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:240997787:true	0	1	240997788	60	75M	*	0	0	CTTTATTTTTATTTTTAAGGTTTTTTTTGTTTGTTTGTTTTGAGATGGAGTCTCGCTCCACCGCCCAGACTGGAG	*	NM:i:0	AS:i:75	XS:i:39
+simread:1:189606653:true	0	1	189606654	60	75M	*	0	0	TGTATCTTCCTCCCCTGCTGTATGTTTCCTGCCCTCAAACATCACACTCCACGTTCTTCAGCTTTAGGACTTGGA	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:207027738:true	0	1	207027739	60	75M	*	0	0	TTTAATAAATGTTGATTGTCCTATTTAATTATTCTCAACTTTCCGATTTTATTTCCCATGTAACAGTGTTGTTTT	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:14397233:false	16	1	14397234	60	75M	*	0	0	TAAAATGCCCCCATCTTCCCAGAGCTGCCAGCCCTCACAATGCCAACAGCTAAATGTACCCAAGTGTTACTGAAC	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:240344442:true	0	1	240344443	24	75M	*	0	0	TACAGGCACCCACCATCATGCCCAGCTAATTTTTGTATTTTTGTAGAAACGGGGTTTCACCATGTTGGCCCAGCT	*	NM:i:0	AS:i:75	XS:i:61
+simread:1:153978724:false	16	1	153978725	60	75M	*	0	0	GCTCACTGCAGCCTCAACCTCCTGGGCCCAAGTGATTTCATCTTATTTTTGGAAAAAAAAACAAACTAAACCAAA	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:237728409:true	0	1	237728410	28	75M	*	0	0	TTTCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTTTCTTTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCT	*	NM:i:0	AS:i:75	XS:i:59
+simread:1:231911906:false	16	1	231911907	60	75M	*	0	0	TCATGTAGCATGCATATGGCTAACGGCAAAGTGAGGGAGGAATAATTATAGTAATAATCACAGTGATGACGTGGA	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:50683371:false	16	1	50683372	60	75M	*	0	0	GCTCAGGCCTTGCAAGAATCTCTACTGCCCAACAAGTCCCTACAAGATGGCATTTAAAAGCAGTCCCTCACGCAC	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:37577445:false	16	1	37577446	60	75M	*	0	0	CCTAGAGAAGCTCCCACTAGGGCTGCAGTCAATTCCCAGGTCTTAGGTGCTGAGCAGTGGGAGGTGGTGGCCATG	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:195211965:false	16	1	195211966	60	75M	*	0	0	AAATAAAGTTTGGCTTTCAGTTGTAACTTTGAATATCTTTATCACAGTTATTTAAAGCCTTTAAAAAGCTTTAAT	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:163841413:false	16	1	163841414	60	75M	*	0	0	TGTGTAACTAACATAATTGGCACTGTCCCTGTAAATTCAAATTGGATATCCTCCCAAATTTTATTTAAGCAATTG	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:101556378:false	16	1	101556379	60	75M	*	0	0	TTTATTTTTTGAGCATGAAAGTAATATATGCTCAGTGTAAACAATTAGGTCATTATAAATATATTTAACAGGAAT	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:20101800:true	0	1	20101801	35	75M	*	0	0	CTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGACTACAGGCATGAGGCACCGCGCCTGGCCAGGACT	*	NM:i:0	AS:i:75	XS:i:55
+simread:1:186794283:true	0	1	186794284	60	75M	*	0	0	GACAAGATAGTACTTGAGCTAAGCCTTGCAGGTTGAGTAGGATTATTCTAGTGGAATTTAGGGAAACGATGTGCA	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:165341382:true	0	1	165341383	60	75M	*	0	0	CTACTCTCATTGACTGTTCAATGCCTATACAAGTAAAACTTTACCAGCACCCAAGTCAAAAAGAAAAAAAAGGGG	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:5469106:true	0	1	5469107	60	75M	*	0	0	CTCATTCTCTCTCCTGCTGCACTGTGAAGAGGTGCCTGTTGCCAAGAGTATAAGTTTCCTGAGGCCTCCCAGGCC	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:89554252:false	16	1	89554253	60	75M	*	0	0	AAATTAAACAGCTCGTTTAACTGATAATCCATACTATATTTGAGTAGGGCTGTCACATGGTTGGAACCTCCGGTT	*	NM:i:0	AS:i:75	XS:i:0
+simread:1:169801933:true	0	1	169801934	40	75M	*	0	0	AGACTGGGTCTCACTATGTTGCCTAGGCTGGTCTCAAACTCCTGGGCTCAAGTGATCCATCTCTGCCTTCCAAAG	*	NM:i:0	AS:i:75	XS:i:52

adam-cli/src/test/resources/ordered.sam

@@ -0,0 +1,14 @@
+@HD	VN:1.5	SO:unsorted
+@SQ	SN:14	LN:107349540	M5:14
+@SQ	SN:GL000211.1	LN:166566	M5:GL000211.1
+@SQ	SN:GL000244.1	LN:39929	M5:GL000244.1
+@SQ	SN:chr22	LN:51304566	M5:CHR22
+@RG	ID:SRR062634	SM:HG00096	CN:WUGSC	DS:SRP001294	LB:2845856850	PI:206	PL:ILLUMINA
+SRR062634.6859057	163	14	16050606	37	100M	=	16050680	174	GGTTTACTGTGTCAGAACAGAGTGTGCCGATTGTGGTCAGGACTCCATAGCATTTCACCATTGAGTTATTTCCGCCCCCTTACGTGTCTCTCTTCAGCGG	GFFGGGGGGGGGGFGGGGGGGGGGGGGGGFGGGBGGCGGGDDEFFGEEFFGFEGEEEEEEEGFEGEEEEDEFEEEEEEE=DBCCBCCCCCACCAC,A@??	X0:i:1	X1:i:0	LB:Z:2845856850	MD:Z:0A1G0C1T1A0A0G1C0A0C0T0C0G0A1A0T0C1C1A1T0T0G0C0A1A0T0T0C0T1C0A1A0A0A0G1G0T0A0T0T1C0A0A1A1T0G0G0T0C0C2C0A0A0A0A0G0A0A0A0G0G0T1C1A0T1C1G0G0G0A0G0A1A1A0T1C0	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:37	XM:i:0	XO:i:0	XT:A:U
+SRR062634.6859057	83	14	16050680	36	100M	=	16050606	-174	CCCCCTTACGTGTCTCTCTTCAGCGGTCTATTATCTCCAAGAGGGCATAAAACACTGAGTAAACAGCTCTTTTATATGTGTTTCCTGGATGAGCCTTCTT	9<5=;;A7B<?A?A?AABB:C:CC=CACE?DDCCD@EEFEEFEFEFGFGGGEGEGGGGGGGEGFGEGGGGFGGGGGGGGGEGGGGGGGGGGGGGFGFGGG	X0:i:2	X1:i:0	XA:Z:14,+19792222,100M,0;	LB:Z:2845856850	MD:Z:0A0A0G0G0T1C1A0T1C1G0G0G0A0G0A1A1A0T1C0A0T0A0C0A1C0A1A0A0A2A0G0T0T0T1T0C1G2T0T3T0C2G0T0T0T0T0T0A0T0G1G0A1G2A1T1C0C0T0T2C0C0A0C0C0A0T0A0G0G1C1	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:0	XM:i:0	XO:i:0	XT:A:R
+SRR062634.20563591	99	GL000211.1	100	0	100M	=	500	161	GGACAACATTCACCTTTAAAAGTTTATTGATCTTTTGTGACATGCACGTGGGTTCCCAGTAGCAAGAAACTAAAGGGTCGCAGGCCGGTTTCTGCTAATT	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGFGGGGGGGFGGGGGEGGGGGGEFGFGGFGGGGFBGGGDE>EEECBCCEEC>E:A@=ADBCAB	X0:i:2	X1:i:0	XA:Z:14,-19792774,100M,0;	LB:Z:2845856850	MD:Z:0T0C0T0A0C0G0A1A0A0A1A0T3T0C0C1A0A0C1G0C1C1A0T0C0A0A0A0A0G0A1A0G0G0T0T0C0A0A0C0T0C0T0G1G0A0G1T0G1A0T0G0C0A0C1C0A1T0T0C0A0A0A0G0A0A0G0T0T0T1T0C0A0G0A0A0T1C0T1C0T0G0C0	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:0	XM:i:0	XO:i:0	XT:A:R
+SRR062634.20563591	147	GL000211.1	500	0	100M	=	100	-161	GCAAGAAACTAAAGGGTCGCAGGCCGGTTTCTGCTAATTTCTTTAATTCCAAGACAGTCTCAAATATTTTCTTATTAACTTCCTGGAGGGAGGCTTATCA	=DDFECDCFEDFEFFFEEFD:EF?FBFFFFBACEF?EGGGEDGGBGEGFGGGGGGFGGGGGGGGGFGGGGFFGGGGGGGFGGGGGGGGGGGGGGGGGGGG	X0:i:2	X1:i:0	XA:Z:14,+19792713,100M,0;	LB:Z:2845856850	MD:Z:0A0T0G0C0A0C1C0A1T0T0C0A0A0A0G0A0A0G0T0T0T1T0C0A0G0A0A0T1C0T1C0T0G0C0A0T0A0G0C0T0T3T0G0T2A0G0A1A1T0T0C2T2C0C0A0C0C0C1A0G0G1C2A0A0A1C0A0C0T0C1A0A0A1G2C0	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:0	XM:i:0	XO:i:0	XT:A:R
+SRR062634.5613583	99	GL000244.1	200	0	100M	=	600	158	TGCAGGCCGGTTTCTGCTAATTTCTTTAATTCCAAGACAGTCTCAATTATTTTCTTATTAACTTCCTGGAGGGAGGCTTATCATTCTCTCTTTTGGATGA	GGEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDEGEFEGDCEEEBF?DDEEGDGEEEGE=ABB?	X0:i:2	X1:i:0	XA:Z:14,-19792696,100M,2;	LB:Z:2845856850	MD:Z:0A0A0G0T0T0T1T0C0A0G0A0A0T1C0T1C0T0G0C0A0T0A0G0C0T0T3T0G0T2A0G0A1A1T0T0C0A1T2C0C0A0C0C0C1A0G0G1C2A0A0A1C0A0C0T0C1A0A0A1G2C0A0C0A0G0G0C0A0G0A2C0C1C0A1	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:2	SM:i:0	XM:i:2	XO:i:0	XT:A:R
+SRR062634.5613583	147	GL000244.1	600	0	100M	=	200	-158	TAACTTCCTGGAGGGAGGCTTATCATTCTCTCTTTTGGATGATTCTAAGTACCAGCTAAAATACAGCTATCATTCATTTTCCTTGATTTGGGAGCCTAAT	@E=EAEEEEGF?EEGEGFFEDBGEGFGGGGFGFFGFGGGGGGGGGGGGGGEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	X0:i:2	X1:i:0	XA:Z:14,+19792638,100M,0;	LB:Z:2845856850	MD:Z:0A0G0G1C2A0A0A1C0A0C0T0C1A0A0A1G2C0A0C0A0G0G0C0A0G0A2C0C1C0A1A0A0A0G1G0T0A0T0T0T0C0A0A0A1C0T0G0G0T1C0A0T0C1A0A0G0G0A0A1G0A3A0G0C0T0C1G1T1A1T0G0A0A0T0G0C0	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:0	XM:i:0	XO:i:0	XT:A:R
+SRR062634.11091461	99	chr22	16050471	0	100M	=	16050505	134	CAAGTAGTAGTGCCATAATTACCAAACATAAAGCCAACTGAGATGCCCAAAGGGGGCCACTCTCCTTGCTTTTCCTCCTTTTTAGAGGATTTATTTCCCA	GGGGGFFFFFFGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGFGGEGGEFEEBEEECFEEEBEFBACDBEEEEEACC?AAAA7=5::59BBBCB6/=CA	X0:i:2	X1:i:0	XA:Z:14,-19792431,100M,0;	LB:Z:2845856850	MD:Z:1T1C0A1A0A2A1T0T0T1T1C0A1A1T0G0C0T0C0A1T0C0A0A0A0G0G0A0A0A0G1T1C0A0A1T0C0T1T0A0A1A0T0G0A0A1C1A0C0A0T0A1C0A0C0A0A0A0G0A0A0G3C0T0C0A0A1A2C2C0T0G0T0C0	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:0	XM:i:0	XO:i:0	XT:A:R
+SRR062634.11091461	147	chr22	16050505	0	100M	=	16050471	-134	CAACTGAGATGCCCAAAGGGGGCCACTCTCCTTGCTTTTCCTCCTTTTTAGAGGATTTATTTCCCATTTTTCTTAAAAAGGAAGAACAAACTGTGCCCTA	=@@?CCCD?@DCDCC@CEFEEGEEEFFFFDEFEGAGGFGGGGGGGGGGGGGFGGGGGFGGDGEGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGG	X0:i:2	X1:i:0	XA:Z:14,+19792397,100M,0;	LB:Z:2845856850	MD:Z:0A0G0G0A0A0A0G1T1C0A0A1T0C0T1T0A0A1A0T0G0A0A1C1A0C0A0T0A1C0A0C0A0A0A0G0A0A0G3C0T0C0A0A1A2C2C0T0G0T0C0C0A0G2G3C0G0T0G0A0A0G1T0G0T0T0T0T0C0T1T1C1A0A0C1	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:0	XM:i:0	XO:i:0	XT:A:R

adam-cli/src/test/resources/unordered.sam

@@ -0,0 +1,14 @@
+@HD	VN:1.5	SO:unsorted
+@SQ	SN:GL000211.1	LN:166566	M5:GL000211.1
+@SQ	SN:GL000244.1	LN:39929	M5:GL000244.1
+@SQ	SN:chr22	LN:51304566	M5:CHR22
+@SQ	SN:14	LN:107349540	M5:14
+@RG	ID:SRR062634	SM:HG00096	CN:WUGSC	DS:SRP001294	LB:2845856850	PI:206	PL:ILLUMINA
+SRR062634.20563591	99	GL000211.1	100	0	100M	=	500	161	GGACAACATTCACCTTTAAAAGTTTATTGATCTTTTGTGACATGCACGTGGGTTCCCAGTAGCAAGAAACTAAAGGGTCGCAGGCCGGTTTCTGCTAATT	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGFGGGGGGGFGGGGGEGGGGGGEFGFGGFGGGGFBGGGDE>EEECBCCEEC>E:A@=ADBCAB	X0:i:2	X1:i:0	XA:Z:14,-19792774,100M,0;	LB:Z:2845856850	MD:Z:0T0C0T0A0C0G0A1A0A0A1A0T3T0C0C1A0A0C1G0C1C1A0T0C0A0A0A0A0G0A1A0G0G0T0T0C0A0A0C0T0C0T0G1G0A0G1T0G1A0T0G0C0A0C1C0A1T0T0C0A0A0A0G0A0A0G0T0T0T1T0C0A0G0A0A0T1C0T1C0T0G0C0	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:0	XM:i:0	XO:i:0	XT:A:R
+SRR062634.20563591	147	GL000211.1	500	0	100M	=	100	-161	GCAAGAAACTAAAGGGTCGCAGGCCGGTTTCTGCTAATTTCTTTAATTCCAAGACAGTCTCAAATATTTTCTTATTAACTTCCTGGAGGGAGGCTTATCA	=DDFECDCFEDFEFFFEEFD:EF?FBFFFFBACEF?EGGGEDGGBGEGFGGGGGGFGGGGGGGGGFGGGGFFGGGGGGGFGGGGGGGGGGGGGGGGGGGG	X0:i:2	X1:i:0	XA:Z:14,+19792713,100M,0;	LB:Z:2845856850	MD:Z:0A0T0G0C0A0C1C0A1T0T0C0A0A0A0G0A0A0G0T0T0T1T0C0A0G0A0A0T1C0T1C0T0G0C0A0T0A0G0C0T0T3T0G0T2A0G0A1A1T0T0C2T2C0C0A0C0C0C1A0G0G1C2A0A0A1C0A0C0T0C1A0A0A1G2C0	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:0	XM:i:0	XO:i:0	XT:A:R
+SRR062634.5613583	99	GL000244.1	200	0	100M	=	600	158	TGCAGGCCGGTTTCTGCTAATTTCTTTAATTCCAAGACAGTCTCAATTATTTTCTTATTAACTTCCTGGAGGGAGGCTTATCATTCTCTCTTTTGGATGA	GGEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDEGEFEGDCEEEBF?DDEEGDGEEEGE=ABB?	X0:i:2	X1:i:0	XA:Z:14,-19792696,100M,2;	LB:Z:2845856850	MD:Z:0A0A0G0T0T0T1T0C0A0G0A0A0T1C0T1C0T0G0C0A0T0A0G0C0T0T3T0G0T2A0G0A1A1T0T0C0A1T2C0C0A0C0C0C1A0G0G1C2A0A0A1C0A0C0T0C1A0A0A1G2C0A0C0A0G0G0C0A0G0A2C0C1C0A1	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:2	SM:i:0	XM:i:2	XO:i:0	XT:A:R
+SRR062634.5613583	147	GL000244.1	600	0	100M	=	200	-158	TAACTTCCTGGAGGGAGGCTTATCATTCTCTCTTTTGGATGATTCTAAGTACCAGCTAAAATACAGCTATCATTCATTTTCCTTGATTTGGGAGCCTAAT	@E=EAEEEEGF?EEGEGFFEDBGEGFGGGGFGFFGFGGGGGGGGGGGGGGEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	X0:i:2	X1:i:0	XA:Z:14,+19792638,100M,0;	LB:Z:2845856850	MD:Z:0A0G0G1C2A0A0A1C0A0C0T0C1A0A0A1G2C0A0C0A0G0G0C0A0G0A2C0C1C0A1A0A0A0G1G0T0A0T0T0T0C0A0A0A1C0T0G0G0T1C0A0T0C1A0A0G0G0A0A1G0A3A0G0C0T0C1G1T1A1T0G0A0A0T0G0C0	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:0	XM:i:0	XO:i:0	XT:A:R
+SRR062634.11091461	99	chr22	16050471	0	100M	=	16050505	134	CAAGTAGTAGTGCCATAATTACCAAACATAAAGCCAACTGAGATGCCCAAAGGGGGCCACTCTCCTTGCTTTTCCTCCTTTTTAGAGGATTTATTTCCCA	GGGGGFFFFFFGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGFGGEGGEFEEBEEECFEEEBEFBACDBEEEEEACC?AAAA7=5::59BBBCB6/=CA	X0:i:2	X1:i:0	XA:Z:14,-19792431,100M,0;	LB:Z:2845856850	MD:Z:1T1C0A1A0A2A1T0T0T1T1C0A1A1T0G0C0T0C0A1T0C0A0A0A0G0G0A0A0A0G1T1C0A0A1T0C0T1T0A0A1A0T0G0A0A1C1A0C0A0T0A1C0A0C0A0A0A0G0A0A0G3C0T0C0A0A1A2C2C0T0G0T0C0	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:0	XM:i:0	XO:i:0	XT:A:R
+SRR062634.11091461	147	chr22	16050505	0	100M	=	16050471	-134	CAACTGAGATGCCCAAAGGGGGCCACTCTCCTTGCTTTTCCTCCTTTTTAGAGGATTTATTTCCCATTTTTCTTAAAAAGGAAGAACAAACTGTGCCCTA	=@@?CCCD?@DCDCC@CEFEEGEEEFFFFDEFEGAGGFGGGGGGGGGGGGGFGGGGGFGGDGEGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGG	X0:i:2	X1:i:0	XA:Z:14,+19792397,100M,0;	LB:Z:2845856850	MD:Z:0A0G0G0A0A0A0G1T1C0A0A1T0C0T1T0A0A1A0T0G0A0A1C1A0C0A0T0A1C0A0C0A0A0A0G0A0A0G3C0T0C0A0A1A2C2C0T0G0T0C0C0A0G2G3C0G0T0G0A0A0G1T0G0T0T0T0T0C0T1T1C1A0A0C1	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:0	XM:i:0	XO:i:0	XT:A:R
+SRR062634.6859057	163	14	16050606	37	100M	=	16050680	174	GGTTTACTGTGTCAGAACAGAGTGTGCCGATTGTGGTCAGGACTCCATAGCATTTCACCATTGAGTTATTTCCGCCCCCTTACGTGTCTCTCTTCAGCGG	GFFGGGGGGGGGGFGGGGGGGGGGGGGGGFGGGBGGCGGGDDEFFGEEFFGFEGEEEEEEEGFEGEEEEDEFEEEEEEE=DBCCBCCCCCACCAC,A@??	X0:i:1	X1:i:0	LB:Z:2845856850	MD:Z:0A1G0C1T1A0A0G1C0A0C0T0C0G0A1A0T0C1C1A1T0T0G0C0A1A0T0T0C0T1C0A1A0A0A0G1G0T0A0T0T1C0A0A1A1T0G0G0T0C0C2C0A0A0A0A0G0A0A0A0G0G0T1C1A0T1C1G0G0G0A0G0A1A1A0T1C0	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:37	XM:i:0	XO:i:0	XT:A:U
+SRR062634.6859057	83	14	16050680	36	100M	=	16050606	-174	CCCCCTTACGTGTCTCTCTTCAGCGGTCTATTATCTCCAAGAGGGCATAAAACACTGAGTAAACAGCTCTTTTATATGTGTTTCCTGGATGAGCCTTCTT	9<5=;;A7B<?A?A?AABB:C:CC=CACE?DDCCD@EEFEEFEFEFGFGGGEGEGGGGGGGEGFGEGGGGFGGGGGGGGGEGGGGGGGGGGGGGFGFGGG	X0:i:2	X1:i:0	XA:Z:14,+19792222,100M,0;	LB:Z:2845856850	MD:Z:0A0A0G0G0T1C1A0T1C1G0G0G0A0G0A1A1A0T1C0A0T0A0C0A1C0A1A0A0A2A0G0T0T0T1T0C1G2T0T3T0C2G0T0T0T0T0T0A0T0G1G0A1G2A1T1C0C0T0T2C0C0A0C0C0A0T0A0G0G1C1	RG:Z:SRR062634	XG:i:0	AM:i:0	NM:i:0	SM:i:0	XM:i:0	XO:i:0	XT:A:R