Add ubsan devcontainer (#5850)

* add multiple containers

add symlinks

add RUN

use echo to create .Rprofile

add workdir

symlink + echo

add dependencies for check

add char vec

update echo

update dockerfile

fix FROM

update dirs

use rocker image

rollback to jans clang image

change docker order

change flags

update makevars

update flags

add workdir

change C version

clang working

rm local .Rprofile

* tidy spaces

* update flags to #5509

* Robust deps install, use files over echo, tidy

* no ARG

* Wrong context?

* need to COPY DESCRIPTION. Try more WORKDIR.

* attempt to fix Makevars, .Rprofile

* Try copying .Rprofile to /root. Remove ~/GitHub for now.

* same changes to gcc container

* Try adding REdtiorSupport extension by default

* load cc conditionally

* Don't install languageserver by default (slow)

* udpate image and makevars

* drop native

* terminal newline

* whitespace

* whitespace

---------

Co-authored-by: Michael Chirico <michaelchirico4@gmail.com>
Co-authored-by: Michael Chirico <chiricom@google.com>

.devcontainer/r-devel-clang-ubsan/.Rprofile

@@ -0,0 +1,2 @@
+Sys.setenv(PROJ_PATH='/workspaces/data.table')
+if (file.exists('.dev/cc.R')) source('.dev/cc.R')

.devcontainer/r-devel-clang-ubsan/Dockerfile

@@ -0,0 +1,23 @@
+FROM rocker/r-devel-ubsan-clang:latest
+
+RUN apt-get -qq update \
+  && apt-get install -y --no-install-recommends git
+
+COPY DESCRIPTION .
+
+# install dependencies without ubsan flags
+RUN Rscript -e '                                          \ 
+read.dcf("DESCRIPTION", c("Imports", "Suggests")) |>      \
+  tools:::.split_dependencies() |>                        \
+  names() |>                                              \
+  setdiff(tools:::.get_standard_package_names()$base) |>  \
+  install.packages()                                      \
+'
+
+# setup cc()
+WORKDIR /root
+COPY .devcontainer/r-devel-clang-ubsan/.Rprofile .
+
+# set ubsan flags
+WORKDIR .R
+COPY .devcontainer/r-devel-clang-ubsan/Makevars .

.devcontainer/r-devel-clang-ubsan/Makevars

@@ -0,0 +1,6 @@
+CC=clang -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer
+CXX=clang++ -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti
+CFLAGS=-g -O3 -Wall -pedantic
+FFLAGS=-g -O2
+CXXFLAGS=-g -O3 -Wall -pedantic
+LDFLAGS=-L/usr/lib/gcc/x86_64-linux-gnu/11/libubsan.so -lubsan

.devcontainer/r-devel-clang-ubsan/devcontainer.json

@@ -0,0 +1,4 @@
+{
+  "build": { "dockerfile": "Dockerfile", "context": "../.." },
+  "customizations": { "vscode": { "extensions": [ "REditorSupport.r" ] } }
+}

.devcontainer/r-devel-gcc/.Rprofile

@@ -0,0 +1,2 @@
+Sys.setenv(PROJ_PATH='/workspaces/data.table')
+if (file.exists('.dev/cc.R')) source('.dev/cc.R')

.devcontainer/r-devel-gcc/Dockerfile

@@ -0,0 +1,18 @@
+FROM registry.gitlab.com/jangorecki/dockerfiles/r-devel-gcc
+
+RUN apt-get -qq update \
+  && apt-get install -y --no-install-recommends git
+
+COPY DESCRIPTION .
+
+RUN Rscript -e '                                          \ 
+read.dcf("DESCRIPTION", c("Imports", "Suggests")) |>      \
+  tools:::.split_dependencies() |>                        \
+  names() |>                                              \
+  setdiff(tools:::.get_standard_package_names()$base) |>  \
+  install.packages()                                      \
+'
+
+# setup cc()
+WORKDIR /root
+COPY .devcontainer/r-devel-gcc/.Rprofile .

.devcontainer/r-devel-gcc/devcontainer.json

@@ -0,0 +1,4 @@
+{
+  "build": { "dockerfile": "Dockerfile", "context": "../.." },
+  "customizations": { "vscode": { "extensions": [ "REditorSupport.r" ] } }
+}