[Backport release-24.11] gdcm: switch to new sdk pattern on darwin and fixes build

[github-actions]

Bot-based backport to release-24.11, triggered by a label in #358792.

• Before merging, ensure that this backport is acceptable for the release.
  • Even as a non-commiter, if you find that it is not acceptable, leave a comment.

[wolfgangwalther]

Result of nixpkgs-review pr 359669 run on aarch64-darwin 1

27 packages marked as broken and skipped:

• c3d
• intensity-normalization
• intensity-normalization.dist
• python311Packages.intensity-normalization
• python311Packages.intensity-normalization.dist
• python311Packages.medpy
• python311Packages.medpy.dist
• python311Packages.pydicom-seg
• python311Packages.pydicom-seg.dist
• python311Packages.pymedio
• python311Packages.pymedio.dist
• python311Packages.pyradiomics
• python311Packages.pyradiomics.dist
• python311Packages.torchio
• python311Packages.torchio.dist
• python312Packages.intensity-normalization
• python312Packages.intensity-normalization.dist
• python312Packages.medpy
• python312Packages.medpy.dist
• python312Packages.pydicom-seg
• python312Packages.pydicom-seg.dist
• python312Packages.pymedio
• python312Packages.pymedio.dist
• python312Packages.pyradiomics
• python312Packages.pyradiomics.dist
• python312Packages.torchio
• python312Packages.torchio.dist

11 packages failed to build:

• ants
• gdcm
• itk (itk_5)
• itk_5_2
• octavePackages.dicom
• python311Packages.dicom2nifti
• python311Packages.dicom2nifti.dist
• python311Packages.gdcm
• python312Packages.dicom2nifti
• python312Packages.dicom2nifti.dist
• python312Packages.gdcm

[wolfgangwalther]

This fails with this:

-- Could NOT find LibXslt (missing: LIBXSLT_LIBRARIES LIBXSLT_INCLUDE_DIR)
CMake Warning at Utilities/doxygen/CMakeLists.txt:332 (message):
  Cannot build man page from docbook (need an XSL processor)


-- Configuring done (9.1s)
CMake Error in Utilities/VTK/Applications/CMakeLists.txt:
  Imported target "VTK::RenderingOpenGL2" includes non-existent path

    "/nix/store/kv941gdcjskclv2phb141s36ah88i6sx-OpenGL-11.0/Library/Frameworks"

  in its INTERFACE_INCLUDE_DIRECTORIES.  Possible reasons include:

  * The path was deleted, renamed, or moved to another location.

  * An install or uninstall procedure did not complete successfully.

  * The installation package was faulty and references files it does not
  provide.



CMake Error in Utilities/VTK/Applications/CMakeLists.txt:
  Imported target "VTK::RenderingOpenGL2" includes non-existent path

    "/nix/store/kv941gdcjskclv2phb141s36ah88i6sx-OpenGL-11.0/Library/Frameworks"

  in its INTERFACE_INCLUDE_DIRECTORIES.  Possible reasons include:

  * The path was deleted, renamed, or moved to another location.

  * An install or uninstall procedure did not complete successfully.

  * The installation package was faulty and references files it does not
  provide.



CMake Error in Utilities/VTK/Applications/CMakeLists.txt:
  Imported target "VTK::RenderingOpenGL2" includes non-existent path

    "/nix/store/kv941gdcjskclv2phb141s36ah88i6sx-OpenGL-11.0/Library/Frameworks"

  in its INTERFACE_INCLUDE_DIRECTORIES.  Possible reasons include:

  * The path was deleted, renamed, or moved to another location.

  * An install or uninstall procedure did not complete successfully.

  * The installation package was faulty and references files it does not
  provide.



CMake Error in Utilities/VTK/Applications/CMakeLists.txt:
  Imported target "VTK::RenderingOpenGL2" includes non-existent path

    "/nix/store/kv941gdcjskclv2phb141s36ah88i6sx-OpenGL-11.0/Library/Frameworks"

  in its INTERFACE_INCLUDE_DIRECTORIES.  Possible reasons include:

  * The path was deleted, renamed, or moved to another location.

  * An install or uninstall procedure did not complete successfully.

  * The installation package was faulty and references files it does not
  provide.



CMake Error in Utilities/VTK/Applications/CMakeLists.txt:
  Imported target "VTK::RenderingOpenGL2" includes non-existent path

    "/nix/store/kv941gdcjskclv2phb141s36ah88i6sx-OpenGL-11.0/Library/Frameworks"

  in its INTERFACE_INCLUDE_DIRECTORIES.  Possible reasons include:

  * The path was deleted, renamed, or moved to another location.

  * An install or uninstall procedure did not complete successfully.

  * The installation package was faulty and references files it does not
  provide.



CMake Error in Utilities/VTK/Applications/CMakeLists.txt:
  Imported target "VTK::RenderingOpenGL2" includes non-existent path

    "/nix/store/kv941gdcjskclv2phb141s36ah88i6sx-OpenGL-11.0/Library/Frameworks"

  in its INTERFACE_INCLUDE_DIRECTORIES.  Possible reasons include:

  * The path was deleted, renamed, or moved to another location.

  * An install or uninstall procedure did not complete successfully.

  * The installation package was faulty and references files it does not
  provide.



-- Generating done (0.3s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_DOCDIR
    CMAKE_INSTALL_INCLUDEDIR
    CMAKE_INSTALL_INFODIR
    CMAKE_INSTALL_LIBEXECDIR
    CMAKE_INSTALL_LOCALEDIR
    CMAKE_INSTALL_MANDIR
    CMAKE_INSTALL_OLDINCLUDEDIR
    CMAKE_INSTALL_SBINDIR
    CMAKE_POLICY_DEFAULT_CMP0025


CMake Generate step failed.  Build files cannot be regenerated correctly.

[wegank]

Depends on #359457