Merge pull request #71 from NLESC-JCER/66-readme-flow

reworking the general flow of the README
NLESC-JCER · Jun 10, 2020 · fe4e268 · fe4e268
2 parents b1fd906 + c81f7ca
commit fe4e268
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Showing 49 changed files with 443 additions and 223 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -50,7 +50,7 @@ jobs:
       run: ./build-wrapper-linux-x86/build-wrapper-linux-x86-64 --out-dir bw-output make all
     - name: Restore wasm
       # As we want to analyse files in git not files we just build
-      run: git restore src/js/newtonraphsonwasm.js src/js/newtonraphsonwasm.wasm
+      run: git restore webassembly/newtonraphsonwasm.js webassembly/newtonraphsonwasm.wasm
     - name: Relativize bw-output
       # Build wrapper runs on CI server while sonar-scanner runs in Docker container need to adjust paths
       run: perl -pi -e 's@/home/runner/work/cpp2wasm/cpp2wasm@/github/workspace@g' bw-output/build-wrapper-dump.json
@@ -59,7 +59,7 @@ jobs:
       env:
         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
-  cpp:
+  cli:
     # The type of runner that the job will run on
     runs-on: ubuntu-latest
 
@@ -68,11 +68,64 @@ jobs:
       # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
       - uses: actions/checkout@v2
 
-      - name: Run C++ examples
-        run: make test-cli test-cgi
-  python:
+      - name: Run C++ test for CLI
+        run: make test-cli
+  cgi:
     # The type of runner that the job will run on
-    name: Python ${{ matrix.python-version }}
+    runs-on: ubuntu-latest
+
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - uses: actions/checkout@v2
+
+      - name: Run C++ test for CGI
+        run: make test-cgi
+  openapi:
+    # The type of runner that the job will run on
+    name: openapi / python-${{ matrix.python-version }}
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [3.6, 3.7, 3.8]
+      fail-fast: true
+    steps:
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - uses: actions/checkout@v2
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v1
+        with:
+          python-version: ${{ matrix.python-version }}
+          architecture: "x64"
+
+      - name: Which Python
+        run: which python
+
+      - name: Install Python dependencies
+        run: make openapi-deps
+
+      - name: Run Python example
+        run: make test-py
+
+      - name: Start web service in background
+        run: |
+          make run-webservice 2>&1 | tee ./run-webservice.log &
+          # Wait for web service to spin up
+          sleep 1
+
+      - name: Test web service
+        run: make test-webservice
+
+      - name: Upload log of services
+        if: ${{ always() }}
+        uses: actions/upload-artifact@v2
+        with:
+          name: openapi-service-logs
+          path: ./run-*.log
+  flask:
+    # The type of runner that the job will run on
+    name: flask / python-${{ matrix.python-version }}
     runs-on: ubuntu-latest
     strategy:
       matrix:
@@ -98,34 +151,35 @@ jobs:
         run: which python
 
       - name: Install Python dependencies
-        run: make py-deps && pip install httpie
+        run: make flask-deps && pip install httpie
 
-      - name: Run Python example
-        run: make test-py
+      - name: Build shared library and link to it
+        run: |
+          make flask/newtonraphsonpy.*.so
 
       - name: Start web application in background
-        run: make run-webapp 2>&1 | tee ./run-webapp.log &
+        run: |
+          make run-webapp 2>&1 | tee ./run-webapp.log &
+          # Wait for web application to spin up
+          sleep 1
 
       - name: Test web application
         run: http --ignore-stdin -f localhost:5001 epsilon=0.001 guess=-20
 
-      - name: Start web service in background
-        run: make run-webservice 2>&1 | tee ./run-webservice.log &
-
-      - name: Test web service
-        run: make test-webservice
-
       - name: Start Celery web app in background
-        run: make run-celery-webapp 2>&1 | tee ./run-celery-webapp.log  &
+        run: |
+          make run-celery-webapp 2>&1 | tee ./run-celery-webapp.log  &
 
       - name: Start Celery worker in background
         run: |
-          cd src/py
+          cd flask
           PYTHONPATH=$PWD/../.. celery -A tasks worker 2>&1 | tee ./run-celery-worker.log &
           cd ../..
 
       - name: Test Celery web app
         run: |
+          # Wait for web celery app and worker to spin up
+          sleep 1
           http --ignore-stdin -hf localhost:5000 epsilon=0.001 guess=-20 | tee response.txt
           # Parse result url from response
           RESULT_URL=$(cat response.txt |grep Location |awk '{print $2}')
@@ -136,9 +190,9 @@ jobs:
         if: ${{ always() }}
         uses: actions/upload-artifact@v2
         with:
-          name: service-logs
+          name: flask-service-logs
           path: ./run-*.log
-  wasm:
+  webassembly:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v2
@@ -153,14 +207,37 @@ jobs:
         run: make build-wasm
 
       - name: Start web server for hosting files in background
-        run: make host-files 2>&1 | tee ./web-server.log &
+        run: make host-webassembly-files 2>&1 | tee ./web-server.log &
+
+      - name: Run tests
+        run: make test-webassembly
+
+      - name: Upload log of web server
+        if: ${{ always() }}
+        uses: actions/upload-artifact@v2
+        with:
+          name: webassembly-service-log
+          path: ./web-server.log
+  react:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Install emscripten
+        uses: mymindstorm/setup-emsdk@v4
+
+      - name: Build WebAssembly module and link to it from react/
+        run: make react/newtonraphsonwasm.js react/newtonraphsonwasm.wasm
+
+      - name: Start web server for hosting files in background
+        run: make host-react-files 2>&1 | tee ./web-server.log &
 
       - name: Run tests
-        run: make test-wasm
+        run: make test-react
 
       - name: Upload log of web server
         if: ${{ always() }}
         uses: actions/upload-artifact@v2
         with:
-          name: web-server-log
+          name: react-service-log
           path: ./web-server.log
diff --git a/.gitignore b/.gitignore
@@ -4,11 +4,13 @@ __pycache__/
 cypress/plugins
 cypress/support
 cypress/videos
+/cypress/screenshots
 
 # Ignore compiled files
-bin/newtonraphson.exe
-src/py/newtonraphsonpy.*.so
-apache2/cgi-bin/newtonraphson
+/cli/newtonraphson.exe
+/cgi/apache2/cgi-bin/newtonraphson
+/openapi/newtonraphsonpy.*.so
+/flask/newtonraphsonpy.*.so
 
 # Ignore entangled db
 .entangled/db.sqlite

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -7,6 +7,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+### Changed
+
+* Directory structure ([#67](https://github.com/NLESC-JCER/cpp2wasm/issues/67))
+* Makefile does less entangles ([#61](https://github.com/NLESC-JCER/cpp2wasm/issues/61))
+
 ## [0.3.0] -  2020-06-09
 
 ### Added

diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
@@ -81,7 +81,7 @@ Ready to contribute? Here's how to set up `cpp2wasm` for local development.
     make entangle
     ```
 
-7. When `src/js/newtonraphsonwasm.js` changes, the WebAssembly module also has to be rebuilt. This will require [emscripten](README.md#accessing-c-function-from-JavaScript-in-web-browser). To rebuild the WebAssembly module run:
+7. When `cli/*hpp` or `webassembly/wasm-newtonraphson.cpp` changes, the WebAssembly module also has to be rebuilt. This will require [emscripten](README.md#accessing-c-function-from-JavaScript-in-web-browser). To rebuild the WebAssembly module run:
 
     ```shell
     make build-wasm

diff --git a/INSTALL.md b/INSTALL.md
@@ -17,12 +17,12 @@ All the commands in the [README.md](README.md) and [CONTRIBUTING.md](CONTRIBUTIN
 
 ```{.makefile file=Makefile}
 # this Makefile snippet is stored as Makefile
-.PHONY: clean clean-compiled clean-entangled test all check entangle entangle-list py-deps start-redis stop-redis run-webservice run-celery-webapp run-webapp build-wasm host-files test-wasm
+.PHONY: clean clean-compiled clean-entangled test all entangle entangle-list py-deps test-cgi test-cli test-py start-redis stop-redis run-webservice test-webservice run-celery-worker run-celery-webapp run-webapp build-wasm host-webassembly-files host-react-files test-webassembly test-react init-git-hook check
 
 UID := $(shell id -u)
 # Prevent suicide by excluding Makefile
 ENTANGLED := $(shell perl -ne 'print $$1,"\n" if /^```\{.*file=(.*)\}/' *.md | grep -v Makefile | sort -u)
-COMPILED := bin/newtonraphson.exe src/py/newtonraphsonpy.*.so apache2/cgi-bin/newtonraphson src/js/newtonraphsonwasm.js  src/js/newtonraphsonwasm.wasm
+COMPILED := cli/newtonraphson.exe openapi/newtonraphsonpy.*.so flask/newtonraphsonpy.*.so cgi/apache2/cgi-bin/newtonraphson webassembly/newtonraphsonwasm.js webassembly/newtonraphsonwasm.wasm react/newtonraphsonwasm.js react/newtonraphsonwasm.wasm
 
 entangle: *.md
 	<<pandoc-tangle>>
@@ -32,7 +32,11 @@ $(ENTANGLED): entangle
 entangled-list:
 	@echo $(ENTANGLED)
 
-py-deps: pip-pybind11 pip-flask pip-celery pip-connexion
+flask-deps: pip-pybind11 pip-celery pip-flask
+
+openapi-deps: pip-pybind11 pip-connexion
+
+py-deps: flask-deps openapi-deps
 
 pip-pybind11:
 	<<pip-pybind11>>
@@ -46,22 +50,25 @@ pip-celery:
 pip-connexion:
 	<<pip-connexion>>
 
-bin/newtonraphson.exe: src/cli-newtonraphson.cpp
+cli/newtonraphson.exe:
 	<<build-cli>>
 
-test-cli: bin/newtonraphson.exe
+test-cli: cli/newtonraphson.exe
 	<<test-cli>>
 
-apache2/cgi-bin/newtonraphson: src/cgi-newtonraphson.cpp
+cgi/apache2/cgi-bin/newtonraphson:
 	<<build-cgi>>
 
-test-cgi: apache2/cgi-bin/newtonraphson
+test-cgi: cgi/apache2/cgi-bin/newtonraphson
 	<<test-cgi>>
 
-src/py/newtonraphsonpy.*.so: src/py-newtonraphson.cpp
+openapi/newtonraphsonpy.*.so:
 	<<build-py>>
 
-test-py: src/py/example.py src/py/newtonraphsonpy.*.so
+flask/newtonraphsonpy.*.so: openapi/newtonraphsonpy.*.so
+	<<flask-link-newtonraphsonpy>>
+
+test-py: openapi/newtonraphsonpy.*.so
 	<<test-py>>
 
 test: test-cli test-cgi test-py test-webservice
@@ -84,31 +91,46 @@ start-redis:
 stop-redis:
 	<<stop-redis>>
 
-run-webapp: src/py/newtonraphsonpy.*.so
+run-webapp: flask/newtonraphsonpy.*.so
 	<<run-webapp>>
 
-run-webservice: src/py/newtonraphsonpy.*.so
+run-webservice: openapi/newtonraphsonpy.*.so
 	<<run-webservice>>
 
 test-webservice:
 	<<test-webservice>>
 
-run-celery-worker: src/py/newtonraphsonpy.*.so
+run-celery-worker: flask/newtonraphsonpy.*.so
 	<<run-celery-worker>>
 
-run-celery-webapp: src/py/newtonraphsonpy.*.so
+run-celery-webapp: flask/newtonraphsonpy.*.so
 	<<run-celery-webapp>>
 
-build-wasm: src/js/newtonraphsonwasm.js src/js/newtonraphsonwasm.wasm
+build-wasm: webassembly/newtonraphsonwasm.js webassembly/newtonraphsonwasm.wasm
 
-src/js/newtonraphsonwasm.js src/js/newtonraphsonwasm.wasm: src/wasm-newtonraphson.cpp
+webassembly/newtonraphsonwasm.js webassembly/newtonraphsonwasm.wasm:
 	<<build-wasm>>
 
-host-files: build-wasm
+react/newtonraphsonwasm.wasm: webassembly/newtonraphsonwasm.wasm
+	<<link-webassembly-wasm>>
+
+react/newtonraphsonwasm.js: webassembly/newtonraphsonwasm.js
+	<<link-webassembly-js>>
+
+host-webassembly-files: build-wasm
 	<<host-files>>
 
-test-wasm:
-	<<test-wasm>>
+host-react-files: react/newtonraphsonwasm.js react/newtonraphsonwasm.wasm
+	<<host-files>>
+
+test-webassembly:
+	<<test-webassembly>>
+
+react/worker.js:
+	<<link-worker>>
+
+test-react: react/worker.js
+	<<test-react>>
 
 init-git-hook:
 	<<hook-permission>>