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Addition of "AlphaLP" as a new term - refinements and suggestions welcome #367

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merged 9 commits into from
Jan 28, 2025
Merged

Addition of "AlphaLP" as a new term - refinements and suggestions welcome #367

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0aae7e3
used script find_next_available_number.py to find the next possible M…
sierra-moxon Jan 28, 2025
a6c0630
used script find_next_available_number.py to find the next possible M…
sierra-moxon Jan 28, 2025
c012852
used script find_next_available_number.py to find the next possible M…
sierra-moxon Jan 28, 2025
8a26afd
add publications from KEGG
sierra-moxon Jan 28, 2025
440abcd
bump the minor revision number according to GH actions failure
sierra-moxon Jan 28, 2025
5b606b7
add extra term to represent the regex used in alphaLP cleavage sites
sierra-moxon Jan 28, 2025
d0fcd3a
format regex similar to other regex
sierra-moxon Jan 28, 2025
6b5568c
remove regex enclosing `/` in name
mobiusklein Jan 28, 2025
e1ec46d
Add ref
mobiusklein Jan 28, 2025
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17 changes: 16 additions & 1 deletion psi-ms.obo
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
format-version: 1.2
data-version: 4.1.188
data-version: 4.1.189
date: 13:01:2025 17:58
saved-by: Joshua Klein
default-namespace: MS
Expand Down Expand Up @@ -8495,6 +8495,15 @@ def: "Cleavage agent Trypsin/P." [PSI:PI]
is_a: MS:1001045 ! cleavage agent name
relationship: has_regexp MS:1001339 ! (?<=[KR])

[Term]
id: MS:1003434
name: AlphaLP
def: "A serine protease that hydrolyzes peptide bonds at the C-terminus of threonine, alanine, serine, and valine. (EC:3.4.21.12)" [DOI:10.1038/228438a0, DOI:10.1021/bi00445a015]
is_a: MS:1001045 ! cleavage agent name
synonym: "alpha-lytic endopeptidase" EXACT []
synonym: "alpha-lytic protease" EXACT []
relationship: has_regexp MS:1003435 ! (?<=[TASV])

[Term]
id: MS:1001314
name: V8-DE
Expand Down Expand Up @@ -12865,6 +12874,12 @@ name: (?<=W)
def: "Regular expression for 2-iodobenzoate." [PSI:PI]
is_a: MS:1001180 ! Cleavage agent regular expression

[Term]
id: MS:1003435
name: (?<=[TSAV])
def: "Regular expression for alphaLP." [PSI:PI]
is_a: MS:1001180 ! Cleavage agent regular expression

[Term]
id: MS:1001961
name: peptide spectrum match scoring algorithm
Expand Down