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Welcome to the wiki for Reproducible data analysis and workflows module of the Fundamentals in Computational Analysis of Large-Scale Datasets course. The wiki contains all the materials needed for the course, including two days of tasks with detailed explanations and examples.

• Day 0
  • Access your workspaces
  • Connect to a Workspace
  • Using VS Code Web
  • Opening a Terminal
  • File Explorer, Search, and Command Palette
  • Install Other Extension
  • Using the R Extension
  • Course directory structure
  • Conda environments
• Monday May 27th 2024
  • Setting up the environment
  • Introduction to Git
  • Task 1: Writing a simple BASH script
  • Task 2: Writing a More Complex BASH script
• Tuesday May 28th 2024
  • Task 1: Writing a simple workflow
  • Task 2: Writing a More Complex Workflow
  • Task3: Mapping reads using Bowtie2
• Resources
  • Reproducible Research
  • Setting up a Project