Merge pull request #815 from EnvironmentOntology/issue-814

addressed issue #814
EnvironmentOntology · Jul 15, 2019 · 4033aee · 4033aee
2 parents 7d7d056 + 414e52c
commit 4033aee
Showing 1 changed file with 21 additions and 11 deletions.
diff --git a/src/envo/envo-edit.owl b/src/envo/envo-edit.owl
@@ -2980,6 +2980,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001662>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001663>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001664>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001665>))
+Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01001666>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_02000000>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_02000001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_02000002>))
@@ -8824,11 +8825,9 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <ht
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_00000303> "SWEETRealm:CoastalRegion"^^xsd:string)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_00000303> "TGN:21483"^^xsd:string)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_00000303> "https://en.wikipedia.org/wiki/Coast"^^xsd:string)
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/ENVO_00000303> "ENVO"^^xsd:string)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00000303> "coast line"^^xsd:string)
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "USGS:SDTS"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00000303> "coastal area"^^xsd:string)
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "USGS:SDTS"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00000303> "coastline"^^xsd:string)
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/ENVO_00000303> "ENVO:00000303"^^xsd:string)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_00000303> "sea coast"^^xsd:string)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000303> <http://purl.obolibrary.org/obo/ENVO_01000687>)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000303> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002131> <http://purl.obolibrary.org/obo/ENVO_01000635>))
@@ -9654,7 +9653,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000380> ObjectSomeValuesFrom(<
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000380> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002220> <http://purl.obolibrary.org/obo/ENVO_00001999>))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000380> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002354> <http://purl.obolibrary.org/obo/ENVO_01000895>))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000380> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002354> <http://purl.obolibrary.org/obo/ENVO_01001533>))
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000380> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002371> <http://purl.obolibrary.org/obo/ENVO_00000303>))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000380> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002371> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_01000635> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0001018> <http://purl.obolibrary.org/obo/ENVO_00000303>))))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_00000381> (massif)
 
@@ -9985,10 +9984,9 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000406> ObjectSomeValuesFrom(<
 # Class: <http://purl.obolibrary.org/obo/ENVO_00000407> (subglacial volcano)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Subglacial_volcano"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_00000407> "A volcano produced by subglacial eruptions or eruptions beneath the surface of a lake melted into a glacier or ice mass by the rising lava."^^xsd:string)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_00000407> <http://orcid.org/0000-0003-1336-5554>)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_00000407> "https://en.wikipedia.org/wiki/Subglacial_volcano"^^xsd:string)
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/ENVO_00000407> "ENVO"^^xsd:string)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00000407> "tuya"^^xsd:string)
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/ENVO_00000407> "ENVO:00000407"^^xsd:string)
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_00000407> "Something more specific than an adjacent_to relation would be better, especially considering the volcano in question may have melted nearby glacial mass."^^xsd:string)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_00000407> "subglacial volcano"^^xsd:string)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000407> <http://purl.obolibrary.org/obo/ENVO_00000247>)
@@ -13264,13 +13262,11 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00002153> <http://purl.obolibrar
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/ENVO_00002154> "ENVO"^^xsd:string)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/ENVO_00002154> "ENVO:00002154"^^xsd:string)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_00002154> "radioactive sediment"^^xsd:string)
-EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_00002154> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_00002007> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000086> <http://purl.obolibrary.org/obo/PATO_0001741>)))
+EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_00002154> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_00002007> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000091> <http://purl.obolibrary.org/obo/PATO_0001741>)))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00002154> <http://purl.obolibrary.org/obo/ENVO_00002114>)
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_00002155> (high-level radioactive sediment)
 
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/ENVO_00002155> "ENVO"^^xsd:string)
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/ENVO_00002155> "ENVO:00002155"^^xsd:string)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_00002155> "high-level radioactive sediment"^^xsd:string)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00002155> <http://purl.obolibrary.org/obo/ENVO_00002154>)
 
@@ -33670,6 +33666,19 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001665> "s
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001665> <http://purl.obolibrary.org/obo/ENVO_00000191>)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001665> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002353> <http://purl.obolibrary.org/obo/ENVO_01001664>))
 
+# Class: <http://purl.obolibrary.org/obo/ENVO_01001666> (glacial run)
+
+AnnotationAssertion(Annotation(<http://purl.obolibrary.org/obo/IAO_0000119> <https://doi.org/10.1111/j.1365-2451.2011.00800.x>) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://en.wikipedia.org/wiki/Jökulhlaup>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001666> "A water flow process which comprises a sudden‐onset high‐magnitude discharge of water and sediment from a glacial source")
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_01001666> <http://orcid.org/0000-0003-1336-5554>)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01001666> <http://orcid.org/0000-0002-4366-3088>)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01001666> "2019-07-03T14:50:41Z"^^xsd:dateTime)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_01001666> "Jökulhlaup")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://doi.org/10.1111/j.1365-2451.2011.00800.x>) rdfs:comment <http://purl.obolibrary.org/obo/ENVO_01001666> "Glacial runs occur in virtually all glaciated regions of the world and are most commonly directly sourced from any part of a glacier where water can accumulate into a lake. A jökulhlaup usually occurs because a glacial lake drains rapidly due to failure of an ice dam or moraine dam.")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001666> "glacial run"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001666> <http://purl.obolibrary.org/obo/ENVO_01000982>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001666> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_00010483> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/ENVO_00002007>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002473> <http://purl.obolibrary.org/obo/ENVO_00002006>))))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001666> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> ObjectUnionOf(<http://purl.obolibrary.org/obo/ENVO_00000435> <http://purl.obolibrary.org/obo/ENVO_03000120>)))
+
 # Class: <http://purl.obolibrary.org/obo/ENVO_02000000> (hypodermic needle)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GEMINA:ag"^^xsd:string) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Hypodermic_needle"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_02000000> "A hypodermic needle is a medical instrument made from a hollow needle. It is commonly used with a syringe to inject substances into the body of an organism."^^xsd:string)
@@ -35046,7 +35055,7 @@ EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_02500042> ObjectIntersect
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_02500043> "A monitoring process that assays the level of environmental pollutants to determine the presence of effect of environmental pollution.")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_02500043> "envoPolar")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_02500043> "pollution monitoring")
-EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_02500043> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_02500041> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/ENVO_02500036>)))
+EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_02500043> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_02500041> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002427> <http://purl.obolibrary.org/obo/ENVO_02500036>)))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_02500044> (urban pollution)
 
@@ -36004,7 +36013,8 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03000090> "Supersonic explosions are known as detonations and subsonic explosions as deflagrations.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000090> "explosion process"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000090> <http://purl.obolibrary.org/obo/ENVO_01000839>)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000090> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_33292> <http://purl.obolibrary.org/obo/CHEBI_63248>)))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000090> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_24431> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_63248>))))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000090> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_00010483> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_33292>))))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000090> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> <http://purl.obolibrary.org/obo/ENVO_01000797>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_03000091> (permafrost methane explosion)
@@ -36066,7 +36076,7 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000095> "s
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000095> <http://purl.obolibrary.org/obo/ENVO_02500000>)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000095> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/ENVO_01000800>))
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000095> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/ENVO_01000801>))
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000095> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> <http://purl.obolibrary.org/obo/ENVO_03000096>))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03000095> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002418> <http://purl.obolibrary.org/obo/ENVO_03000096>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_03000096> (season)