Multiprocessing for dcm2mha and mha2nnunet #3
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snorthman
approved these changes
May 25, 2022
| @@ -109,6 +111,7 @@ def __init__( | |||
| scan_postprocess_func: Optional[Callable[[sitk.Image], sitk.Image]] = None, | |||
| out_dir_scans: PathLike = "imagesTr", | |||
| out_dir_annot: PathLike = "labelsTr", | |||
| num_threads: int = 4, | |||
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This is based on experience. A high number of threads can cause memory issues, as images can be big (and this number of threads is applied throughout). Four threads typically fill up the IO bandwidth (which is the goal of multiprocessing here, which is likely the bottleneck).
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