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@DIAGNijmegen

Diagnostic Image Analysis Group

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  1. neural-odes-segmentation neural-odes-segmentation Public

    Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands

    Python 106 28

  2. StreamingCNN StreamingCNN Public

    To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of …

    Jupyter Notebook 98 23

  3. pathology-whole-slide-data pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Python 96 27

  4. pathology-streaming-pipeline pathology-streaming-pipeline Public

    Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.

    Python 75 10

  5. pathology-hooknet pathology-hooknet Public

    Jupyter Notebook 56 11

  6. pathology-he-auto-augment pathology-he-auto-augment Public

    H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.

    Python 52 7

Repositories

Showing 10 of 159 repositories
  • website-content Public

    This repository stores all the content for the diag websites.

    DIAGNijmegen/website-content’s past year of commit activity
    TeX 6 MIT 75 28 (1 issue needs help) 13 Updated Jan 9, 2025
  • Literature Public

    The literature generated and cited by the group

    DIAGNijmegen/Literature’s past year of commit activity
    TeX 0 3 0 0 Updated Jan 8, 2025
  • rse-pyswot Public

    Python implementation of JetBrains/swot

    DIAGNijmegen/rse-pyswot’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Jan 7, 2025
  • rse-grand-challenge-forge Public

    Generation of challenge packs

    DIAGNijmegen/rse-grand-challenge-forge’s past year of commit activity
    Python 0 Apache-2.0 0 4 1 Updated Jan 6, 2025
  • rse-panimg Public

    Conversion of medical images to MHA and TIFF.

    DIAGNijmegen/rse-panimg’s past year of commit activity
    Python 13 Apache-2.0 5 5 0 Updated Jan 6, 2025
  • DIAGNijmegen/llm_extractinator’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jan 6, 2025
  • bodyct-sybil-lung-cancer-risk-2 Public Forked from reginabarzilaygroup/Sybil

    Deep Learning for Lung Cancer Risk Prediction using LDCT

    DIAGNijmegen/bodyct-sybil-lung-cancer-risk-2’s past year of commit activity
    Python 0 MIT 44 0 2 Updated Jan 5, 2025
  • cobra-streamingclam Public Forked from DIAGNijmegen/pathology-streamingclam

    Lightstream implementation of the StreamingCLAM model

    DIAGNijmegen/cobra-streamingclam’s past year of commit activity
    Python 0 GPL-3.0 4 0 0 Updated Dec 30, 2024
  • pathology-whole-slide-learning Public

    library for weak whole slide learning with attention to compress and classify whole slide images

    DIAGNijmegen/pathology-whole-slide-learning’s past year of commit activity
    Python 0 Apache-2.0 1 1 0 Updated Dec 22, 2024
  • pathology-whole-slide-packer Public

    extracts tissue sections from one or multiple whole slide images and combines them into a single new slide removing excess white space

    DIAGNijmegen/pathology-whole-slide-packer’s past year of commit activity
    Python 5 Apache-2.0 1 0 0 Updated Dec 20, 2024

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