A QIIME 2 Plugin for assessing the quality and completeness of metagenome-assembled viral genomes.
Clone the repository:
git clone https://github.com/bokulich-lab/q2-viromics.git
cd q2-viromics
Then, run:
mamba create -n q2-viromics -c conda-forge -c bioconda -c https://packages.qiime2.org/qiime2/2024.10/metagenome/passed/ -c defaults q2cli q2-types checkv genomad pyhmmer
After this completes, activate the new environment you created by running:
conda activate q2-viromics
make install
make dev
qiime dev refresh-cache