README.md

q2-viromics

A QIIME 2 Plugin for assessing the quality and completeness of metagenome-assembled viral genomes.

Install development version of q2-viromics

Clone the repository:

git clone https://github.com/bokulich-lab/q2-viromics.git
cd q2-viromics

Then, run:

mamba create -n q2-viromics -c conda-forge -c bioconda -c https://packages.qiime2.org/qiime2/2024.10/metagenome/passed/ -c defaults q2cli q2-types checkv genomad pyhmmer

After this completes, activate the new environment you created by running:

conda activate q2-viromics

make install

make dev
qiime dev refresh-cache