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commit 724d09b
Author: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
Date:   Sat Jan 18 17:31:57 2025 +0000

    Add helper data `PyrenewHEWData` class to hold input data to `PyrenewHewModel`s (#283)

commit bc76d59
Author: Subekshya Bidari <37636707+sbidari@users.noreply.github.com>
Date:   Fri Jan 17 14:18:11 2025 -0500

    add subpopulation to LatentInfectionProcess (#282)

commit a70e296
Author: Subekshya Bidari <37636707+sbidari@users.noreply.github.com>
Date:   Wed Jan 15 15:29:44 2025 -0500

    add setup-r (#295)
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damonbayer committed Jan 21, 2025
1 parent aa8032c commit 75774d6
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10 changes: 7 additions & 3 deletions .github/workflows/pipeline-run-check.yaml
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Expand Up @@ -7,7 +7,11 @@ on:

jobs:
run-pipeline:
runs-on: ubuntu-latest
strategy:
matrix:
os: [ubuntu-22.04, macos-latest]
runs-on: ${{matrix.os}}

env:
NHSN_API_KEY_ID: ${{ secrets.NHSN_API_KEY_ID }}
NHSN_API_KEY_SECRET: ${{ secrets.NHSN_API_KEY_SECRET }}
Expand All @@ -22,12 +26,12 @@ jobs:
with:
r-version: "release"
use-public-rspm: true
- name: "Set up Quarto"
uses: quarto-dev/quarto-actions/setup@v2
- name: "Install poetry"
run: pip install poetry
- name: "Install pyrenew-hew"
run: poetry install
- name: "Set up Quarto"
uses: quarto-dev/quarto-actions/setup@v2
- name: "Set up dependencies for hewr"
uses: r-lib/actions/setup-r-dependencies@v2
with:
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3 changes: 3 additions & 0 deletions .github/workflows/pre-commit.yaml
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Expand Up @@ -13,6 +13,9 @@ jobs:
- uses: actions/setup-python@v5
with:
python-version: "3.12"
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true
- uses: actions/cache@v4
with:
path: |
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386 changes: 0 additions & 386 deletions demos/hosp_only_ww_model/data/fit_hosp_only/stan_data.json

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137 changes: 0 additions & 137 deletions demos/hosp_only_ww_model/model_comp.qmd

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122 changes: 0 additions & 122 deletions demos/hosp_only_ww_model/pyrenew_hew_model.qmd

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