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Hi there 👋 we are the Biodata Analysis Group

The Biodata Analysis Group (also known as the Bioinformatics Lab at the Institute of Applied Biosciences (INAB / CERTH) is active in Bioinformatics research, focusing on the design of new algorithms and pipelines.

We are a group of enthusiastic researchers, active in the following key fields:

  • Machine Learning and Data Mining
  • Multi-omics data integration
  • Training for Life Sciences

For more details, have a look at our site.

Popular repositories Loading

  1. UMIc UMIc Public

    Forked from mcmaniou/Project-UMIs

    A framework implementing a method for UMI deduplication and reads correction.

    R 8 4

  2. CWL_HTS_pipelines CWL_HTS_pipelines Public

    CWL workflows and wrappers for processing HTS data from RNA-Seq, ChIP-Seq and Germline Variant calling experiments

    Common Workflow Language 4 1

  3. synth4bench synth4bench Public

    Forked from sfragkoul/synth4bench

    A framework for generating synthetic genomics data for the evaluation of tumor-only somatic variant calling algorithms.

    R 3 1

  4. tripr tripr Public

    T-cell Receptor/Immunoglobulin Profiler {tripr}

    R 2 4

  5. lineagespot lineagespot Public

    Forked from npechl/lineagespot

    Ιdentify and assign different SARS-CoV-2 lineages based on a single VCF file

    R 2

Repositories

Showing 10 of 51 repositories
  • tripr Public

    T-cell Receptor/Immunoglobulin Profiler {tripr}

    BiodataAnalysisGroup/tripr’s past year of commit activity
    R 2 MIT 4 1 0 Updated Jan 23, 2025
  • APNet Public
    BiodataAnalysisGroup/APNet’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 1 Updated Jan 22, 2025
  • DOME-Training-Course Public

    This a repository that holds the training course for the DOME ML Recommendations.

    BiodataAnalysisGroup/DOME-Training-Course’s past year of commit activity
    TeX 0 0 0 0 Updated Jan 19, 2025
  • BiodataAnalysisGroup.github.io Public

    Biodata Analysis Group website

    BiodataAnalysisGroup/BiodataAnalysisGroup.github.io’s past year of commit activity
    HTML 0 MIT 1 0 0 Updated Jan 13, 2025
  • vivi Public Forked from npechl/vivi
    BiodataAnalysisGroup/vivi’s past year of commit activity
    0 MIT 2 0 0 Updated Jan 7, 2025
  • BioHackathon Public
    BiodataAnalysisGroup/BioHackathon’s past year of commit activity
    Jupyter Notebook 1 MIT 0 30 0 Updated Dec 13, 2024
  • BiodataAnalysisGroup/2024-12-ml-biocommons-au’s past year of commit activity
    2 CC-BY-4.0 3 0 0 Updated Dec 5, 2024
  • CALM Public
    BiodataAnalysisGroup/CALM’s past year of commit activity
    0 MIT 0 0 0 Updated Dec 4, 2024
  • ELIXIR-BFSP-Odyssey Public Forked from npechl/odyssey

    Exploring Molecular Biodiversity in Greece: An Interactive R Shiny App Approach

    BiodataAnalysisGroup/ELIXIR-BFSP-Odyssey’s past year of commit activity
    R 0 MIT 2 3 0 Updated Nov 26, 2024
  • synth4bench Public Forked from sfragkoul/synth4bench

    A framework for generating synthetic genomics data for the evaluation of tumor-only somatic variant calling algorithms.

    BiodataAnalysisGroup/synth4bench’s past year of commit activity
    R 3 MIT 2 0 0 Updated Nov 20, 2024

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