Odyssey

Odyssey is an R shiny application for the exploration of Molecular Biodiversity in Greece.

Table of Contents

• Installation
• Usage
• Contributing
• License
• Authors
• Related_Publications

Installation

To install Odyssey, follow these steps:

1. Install the necessary R packages. You can use the following command to install all dependencies:

# Install necessary packages
install.packages(c("shiny", "data.table", "bslib", "stringr", "ggplot2", "paletteer", "reactable", "lubridate", "leaflet", "leaflet.extras", "htmltools", "echarts4r", "crosstalk"))

2. Clone the repository from GitHub

git clone https://github.com/BiodataAnalysisGroup/ELIXIR-BFSP-Odyssey.git

Usage

To run the Odyssey Shiny app, follow these steps:

1. Open the main.R script in RStudio.
2. Execute the script by clicking the "Run" button

Contributing

Your input is invaluable - whether it's suggesting a new chart/analysis or reporting a bug, we welcome and greatly appreciate your feedback!

Feel free to open a GitHub issue or contact us via inab.bioinformatics@lists.certh.gr.

License

This work, as a whole, is licensed under the MIT license.

The code contained in this website is simultaneously available under the MIT license; this means that you are free to use it in your own packages, as long as you cite the source.

Authors

• Nikos Pechlivanis
• Natasa Anastasiadou

Related_Publications

• N. Pechlivanis, A. Anastasiadou, A. Papageorgiou, E. Pafilis, and F. Psomopoulos, “Odyssey: an Interactive R Shiny App Approach to explore Molecular Biodiversity in Greece,” 23rd European Conference On Computational Biology (ECCB24), Sep. 2024, doi: 10.5281/ZENODO.14186452.