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@BesenbacherLab

BesenbacherLab

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  1. genovo genovo Public

    Forked from jbethune/kmerPaPa

    GeNovo - Identifying disease genes with de-novo mutations

    Rust

  2. kmerPaPa kmerPaPa Public

    Tool to calculate a "k-mer pattern partition" from position specific k-mer counts.

    Python 1

  3. lionheart lionheart Public

    LIONHEART is a method for detecting cancer from whole genome sequenced plasma cell-free DNA.

    Python 2 1

  4. kmer_counter kmer_counter Public

    Count k-mers in regions or at SNVs or at indel breakpoints.

    Python

Repositories

Showing 10 of 10 repositories
  • lionheart Public

    LIONHEART is a method for detecting cancer from whole genome sequenced plasma cell-free DNA.

    BesenbacherLab/lionheart’s past year of commit activity
    Python 2 MIT 1 1 0 Updated Jan 9, 2025
  • kmerPaPa Public

    Tool to calculate a "k-mer pattern partition" from position specific k-mer counts.

    BesenbacherLab/kmerPaPa’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Dec 11, 2024
  • genovo Public Forked from jbethune/kmerPaPa

    GeNovo - Identifying disease genes with de-novo mutations

    BesenbacherLab/genovo’s past year of commit activity
    Rust 0 MIT 1 0 0 Updated Nov 25, 2024
  • UMIseq_variant_calling Public

    Detect somatic SNVs from deep targeted UMI-seq cfDNA

    BesenbacherLab/UMIseq_variant_calling’s past year of commit activity
    Python 0 0 0 0 Updated Sep 30, 2024
  • kmer_counter Public

    Count k-mers in regions or at SNVs or at indel breakpoints.

    BesenbacherLab/kmer_counter’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 27, 2024
  • ctDNAtool Public Forked from Hogfeldt/ctDNAtool

    A software for creating and manipulating statistics from cfDNA data

    BesenbacherLab/ctDNAtool’s past year of commit activity
    Python 0 2 0 0 Updated Feb 11, 2024
  • mutexpect Public Forked from jbethune/mutexpect
    BesenbacherLab/mutexpect’s past year of commit activity
    Rust 0 MIT 1 0 0 Updated Feb 9, 2023
  • ROC-utils Public
    BesenbacherLab/ROC-utils’s past year of commit activity
    Python 0 0 0 0 Updated Dec 9, 2022
  • Genovo_Input Public
    BesenbacherLab/Genovo_Input’s past year of commit activity
    0 0 0 0 Updated Jan 17, 2022
  • pattern_partition_prediction Public Forked from jbethune/pattern_partition_prediction
    BesenbacherLab/pattern_partition_prediction’s past year of commit activity
    Rust 0 MIT 1 0 0 Updated Oct 3, 2021

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