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Fix a bug with HDF5 boxcenter data #1213

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merged 11 commits into from
Jul 29, 2020
Merged

Fix a bug with HDF5 boxcenter data #1213

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479392e
Update HDF5 related code for better write performance
houjun Jun 3, 2020
d4862b4
Update Makefile for HDF5Benchmark
houjun Jun 3, 2020
46ca0ee
Merge remote-tracking branch 'upstream/development' into development
houjun Jun 17, 2020
cb3abcb
Update GNUmakefile
houjun Jun 17, 2020
11a95c4
Update inputs
houjun Jun 17, 2020
1de959a
Merge remote-tracking branch 'upstream/development' into development
houjun Jun 17, 2020
26d538a
Use correct MPI datatype from AMReX
houjun Jun 18, 2020
d5c9550
Merge remote-tracking branch 'upstream/development' into development
houjun Jun 18, 2020
7dbab50
Fix a bug that causes wrong value assignment for the boxcenter dataset
houjun Jul 28, 2020
ba74c55
Merge with upstream
houjun Jul 28, 2020
d2726e5
Revert unnecessary makefile change
houjun Jul 28, 2020
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2 changes: 1 addition & 1 deletion Src/Base/AMReX_PlotFileUtil.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -947,7 +947,7 @@ void WriteMultiLevelPlotfileHDF5 (const std::string& plotfilename,
for(int i(0); i < AMREX_SPACEDIM; ++i) {
vbox[(vbCount * 2 * AMREX_SPACEDIM) + i] = sortedGrids[b].smallEnd(i);
vbox[(vbCount * 2 * AMREX_SPACEDIM) + i + AMREX_SPACEDIM] = sortedGrids[b].bigEnd(i);
centering[vbCount + i] = sortedGrids[b].ixType().test(i) ? 1 : 0;
centering[vbCount * AMREX_SPACEDIM + i] = sortedGrids[b].ixType().test(i) ? 1 : 0;
}
++vbCount;
}
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