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@zovoilis-lab

Zovoilis Lab

Zovoilis Lab at the University of Manitoba

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  1. REDItools REDItools Public

    Forked from BioinfoUNIBA/REDItools

    REDItools are python scripts to investigate RNA editing at genomic scale.

    Python 1

  2. Flye_ppcle64 Flye_ppcle64 Public

    Forked from mikolmogorov/Flye

    De novo assembler for single molecule sequencing reads using repeat graphs, modified to compile on ppcle64.

    C 1

  3. NA12878 NA12878 Public

    Forked from nanopore-wgs-consortium/NA12878

    Data and analysis for NA12878 genome on nanopore

    Python

  4. Chiron Chiron Public

    Forked from haotianteng/Chiron

    A basecaller for Oxford Nanopore Technologies' sequencers

    Python

  5. flappie flappie Public

    Forked from nanoporetech/flappie

    Flip-flop basecaller for Oxford Nanopore reads

    C

  6. taiyaki taiyaki Public

    Forked from nanoporetech/taiyaki

    Training models for basecalling Oxford Nanopore reads

    Python

Repositories

Showing 10 of 18 repositories
  • nanoseq Public Forked from nf-core/nanoseq

    Nanopore demultiplexing, QC and alignment pipeline

    zovoilis-lab/nanoseq’s past year of commit activity
    Nextflow 0 MIT 83 0 0 Updated May 9, 2023
  • Flye_ppcle64 Public Forked from mikolmogorov/Flye

    De novo assembler for single molecule sequencing reads using repeat graphs, modified to compile on ppcle64.

    zovoilis-lab/Flye_ppcle64’s past year of commit activity
    C 1 168 0 0 Updated Dec 14, 2022
  • Dinopore Public Forked from darelab2014/Dinopore

    DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing

    zovoilis-lab/Dinopore’s past year of commit activity
    R 0 3 0 0 Updated Jun 27, 2022
  • nanocompore Public Forked from tleonardi/nanocompore

    RNA modifications detection from Nanopore dRNA-Seq data

    zovoilis-lab/nanocompore’s past year of commit activity
    Python 0 GPL-3.0 13 0 0 Updated Jan 25, 2022
  • minimap2 Public Forked from lh3/minimap2

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

    zovoilis-lab/minimap2’s past year of commit activity
    C 0 431 0 0 Updated Jan 14, 2022
  • nanopolish-ppc64le Public Forked from jts/nanopolish

    Signal-level algorithms for MinION data

    zovoilis-lab/nanopolish-ppc64le’s past year of commit activity
    C++ 0 MIT 197 0 0 Updated Jul 23, 2021
  • EpiNano Public Forked from novoalab/EpiNano

    Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads

    zovoilis-lab/EpiNano’s past year of commit activity
    Python 0 GPL-2.0 31 0 0 Updated Jul 20, 2021
  • REDItools Public Forked from BioinfoUNIBA/REDItools

    REDItools are python scripts to investigate RNA editing at genomic scale.

    zovoilis-lab/REDItools’s past year of commit activity
    Python 1 MIT 34 0 0 Updated Jul 17, 2021
  • bwa Public Forked from lh3/bwa

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

    zovoilis-lab/bwa’s past year of commit activity
    C 0 GPL-3.0 562 0 0 Updated Jul 16, 2021
  • prymetime Public Forked from emyounglab/prymetime

    Pipeline for Recombinant Yeast genoMEs That Identifies Markers of Engineering

    zovoilis-lab/prymetime’s past year of commit activity
    Shell 0 MIT 4 0 0 Updated Jun 30, 2021
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